@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128796 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364120 |
Acremonium sclerotigenum FN706552_CBS_124.42 |
261921
|
3188372
|
4364339 |
Geosmithia brunnea NR_158517_Hulcr_11903 |
|
|
4364629 |
Geosmithia cnesini NR_152883_MK_1802 |
|
|
4364305 |
Geosmithia eupagioceri AM947666_MKA1_b |
|
|
4364694 |
Geosmithia fassatiae AM421039_AK31_98 |
240215
|
5974482
|
4364119 |
Geosmithia fassatiae KF808295_CCF4331 |
240215
|
5974482
|
4364681 |
Geosmithia flava AJ578484_IMI_224697 |
240216
|
5974483
|
4364832 |
Geosmithia langdonii AM181424_AK104_97 |
240214
|
5974481
|
4364610 |
Geosmithia langdonii KF808298_CCF4326 |
240214
|
5974481
|
4364673 |
Geosmithia langdonii KR229908_CNR70 |
240214
|
5974481
|
4364197 |
Geosmithia lavendula AM949861_CBS_115347 |
39312
|
3194032
|
4364851 |
Geosmithia lavendula KT155749_CBS_121748 |
39312
|
3194032
|
4364840 |
Geosmithia lavendula KT155945_CBS_582.67 |
39312
|
3194032
|
4364247 |
Geosmithia microcorthyli MG589551_NIOSN_M_67 |
|
|
4364710 |
Geosmithia microcorthyli NR_137566_CCF3861 |
|
|
4364548 |
Geosmithia morbida FN434081_CBS_124664 |
|
|
4364367 |
Geosmithia morbida KC113640_ATCC_MYA_4903 |
|
|
4364599 |
Geosmithia morbida KM879442_MTB121213_12C_91 |
|
|
4364806 |
Geosmithia obscura AJ784999_CCF3422 |
286725
|
5979480
|
4364498 |
Geosmithia obscura AM181460_CCF3425 |
286725
|
5979480
|
4364239 |
Geosmithia obscura KT155620_CBS_121749 |
286725
|
5979480
|
4364344 |
Geosmithia omnicola NR_160446_CNR5 |
|
|
4364784 |
Geosmithia pallida AJ578489_IMI_051240b |
240217
|
5974484
|
4364912 |
Geosmithia pallida AM181438_MK350 |
240217
|
5974484
|
4364545 |
Geosmithia pallida KF808303_CCF4279 |
240217
|
5974484
|
4364279 |
Geosmithia pallida MH426778_Hulcr_18777 |
240217
|
5974484
|
4364429 |
Geosmithia proliferans NR_158518_Hulcr_12334 |
|
|
4364687 |
Geosmithia putterillii AF033384_NRRL_2024 |
68827
|
3194034
|
4364176 |
Geosmithia putterillii KF808307_CBS_248.32 |
68827
|
3194034
|
4364559 |
Geosmithia rufescens NR_137536_MK_1803 |
|
|
4364865 |
Geosmithia sp. 1 AK 2017 MF067042 1441 |
|
|
4364278 |
Geosmithia sp. 2 AK 2017 MF067041 1242 |
|
|
4364798 |
Geosmithia sp. 24 NL 2014 KF808311 RJ06ka |
|
|
4364611 |
Geosmithia sp. 24 SF 2015 KP691917 MB159 |
|
|
4364612 |
Geosmithia sp. 28 NL 2014 KF808312 RJ279m |
|
|
4364544 |
Geosmithia sp. 8 NL 2014 KF808320 CCF4277 |
|
|
4364871 |
Geosmithia sp. 9 RJ 2014 KY568172 14KaFJD |
|
|
4364634 |
Geosmithia sp. CCF3645 AM421061 CCF3645 |
|
|
4364698 |
Geosmithia sp. CSN158 ITS5 CS29 |
|
|
4364349 |
Geosmithia sp. CSN159 ITS4 CS30 |
|
|
4364549 |
Geosmithia sp. CSN227 ITSds |
|
|
4364750 |
Geosmithia sp. PMM2037 ITS1 |
|
|
4364668 |
Geosmithia ulmacea NR_160447_CNR23 |
|
|