@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128801 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364121 |
Neocucurbitaria acanthocladae NR_156354_CBS_142398 |
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4364425 |
Neocucurbitaria acerina NR_154254_MFLUCC_16_1450 |
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4364116 |
Neocucurbitaria aetnensis NR_156355_CBS_142404 |
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4364517 |
Neocucurbitaria cava NR_160112_CBS_257.68 |
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4364651 |
Neocucurbitaria cinereae NR_156356_CBS_142406 |
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4364136 |
Neocucurbitaria cisticola NR_156357_CBS_142402 |
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4364365 |
Neocucurbitaria irregularis NR_160337_UTHSC_DI16_229 |
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4364462 |
Neocucurbitaria juglandicola NR_156358_CBS_142390 |
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4364359 |
Neocucurbitaria keratinophila NR_137017_CBS_121759 |
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4364416 |
Neocucurbitaria populi NR_156359_CBS_142393 |
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4364848 |
Neocucurbitaria prunicola NR_166273_CPC_33709 |
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4364723 |
Neocucurbitaria quercina NR_160056_CBS_115095 |
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4364752 |
Neocucurbitaria rhamnicola NR_156360_CBS_142396 |
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4364886 |
Neocucurbitaria rhamnioides NR_156361_CBS_142395 |
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4364718 |
Neocucurbitaria ribicola NR_156362_CBS_142394 |
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4364153 |
Neocucurbitaria salicis albae_NR_163365_CPC_33162 |
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4364124 |
Neocucurbitaria sp. CSN629 ITS4 CS30 |
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4364835 |
Neocucurbitaria sp. CSN631 ITS4 CS022 |
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4364438 |
Neocucurbitaria unguis hominis_EU930010_CBS_378.92 |
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4364635 |
Neocucurbitaria unguis-hominis KP132548_CNRMA6.243 |
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4364400 |
Neocucurbitaria vachelliae NR_156363_CBS_142397 |
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4364268 |
Parafenestella mackenziei NR_154364_MFLUCC_16_1451 |
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4364889 |
Parafenestella ostryae NR_154365_MFLU_16_0184 |
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