@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128805 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364104 |
Camarosporidiella halimodendri MF434146_MFLUCC_14_0901 |
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4364811 |
Camarosporidiella mackenziei MF434159_MFLUCC_14_0883 |
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4364352 |
Coniothyrium dolichi JF740183_CBS_124140 |
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4364837 |
Coniothyrium glycines JF740184_CBS_124455 |
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4364362 |
Coniothyrium hakeae NR_154839_CPC_27620 |
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4364489 |
Coniothyrium multiporum NR_111617_CBS_353.65 |
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4364717 |
Coniothyrium palmarum AY720708_CBS_400.71 |
300248
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3872347
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4364353 |
Coniothyrium telephii JF740188_CBS_188.71 |
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4364432 |
Coniothyrium telephii JF740189_CBS_856.97 |
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4364804 |
Foliophoma fallens KY929147_CBS_161.78 |
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4364286 |
Foliophoma fallens MH859609_CBS_284.70 |
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4364617 |
Hazslinszkyomyces aloes KF777142_CPC_21572 |
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4364434 |
Hazslinszkyomyces aptrootii KY929149_CBS_483.95 |
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4364251 |
Hazslinszkyomyces lycii KY929150_CPC_30998 |
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4364623 |
Hazslinszkyomyces lycii KY929151_CPC_31014 |
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4364272 |
Ochrocladosporium elatum EU040233_CBS_146.33 |
652621
|
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4364200 |
Ochrocladosporium frigidarii EU040234_CBS_103.81 |
470062
|
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4364090 |
Parapyrenochaeta protearum JQ044434_CBS_131315 |
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4364791 |
Pleosporineae sp. CSN1911 ITS4 CS30 |
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4364313 |
Pleosporineae sp. CSN1923 ITSds partial |
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4364751 |
Pleosporineae sp. CSN650 ITS4 CS022 |
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4364404 |
Pyrenochaeta pinicola KJ869152_CPC_23455 |
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4364206 |
Querciphoma carteri JF740181_CBS_105.91 |
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4364298 |
Setophaeosphaeria badalingensis KJ869162_CPC_23643 |
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4364906 |
Setophaeosphaeria citri MG263524_CPC_27148 |
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4364132 |
Setophaeosphaeria citricola MH107916_CBS_143179 |
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4364269 |
Setophaeosphaeria hemerocallidis KJ869161_CPC_23645 |
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4364809 |
Setophaeosphaeria sidae NR_156261_CBS_135108 |
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4364137 |
Subplenodomus apiicola JF740196_CBS_285.72 |
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4364797 |
Subplenodomus drobnjacensis JF740211_CBS_269.92 |
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4364100 |
Subplenodomus galicola KY554204_MFLU_15_1368 |
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4364773 |
Subplenodomus valerianae JF740251_CBS_630.68 |
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4364175 |
Subplenodomus violicola FJ427082_CBS_100272 |
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