@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128843 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4366508 |
Ceraceomyces serpens AF090882_KHL8478 |
86099
|
1314406
|
4366200 |
Ceriporiopsis gilvescens FJ496684_BRNM_710166 |
83261
|
1330516
|
4366393 |
Emmia lacerata JX623916_Dai_10734 |
|
|
4366473 |
Gloeoporus dichrous EU118627_KHL_11173_GB |
329018
|
1246461
|
4366511 |
Gloeoporus pannocinctus EU546099_BRNM_709972 |
98758
|
3179390
|
4366242 |
Hyphodontia setulosa GQ259417_AH31879 |
|
|
4366131 |
Hyphodontia setulosa GU461312_PH11749 |
|
|
4366014 |
Hyphodontia setulosa KP135382_HHB_6891_Sp |
|
|
4366282 |
Mycoacia fuscoatra JN649352_KHL13275_GB |
139168
|
3146475
|
4366327 |
Mycoacia fuscoatra KP135364_FP_102173 |
139168
|
3146475
|
4366265 |
Mycoacia fuscoatra KP135365_HHB_10782_Sp |
139168
|
3146475
|
4366357 |
Mycoacia fuscoatra KP135366_HHB_18642 |
139168
|
3146475
|
4366466 |
Mycoacia fuscoatra KP135367_HHB_15354T |
139168
|
3146475
|
4366447 |
Mycoacia nothofagi GU480000_KHL13750 |
669510
|
3028320
|
4365967 |
Mycoacia uda AY787676_olrim913_SUAS |
139123
|
3148849
|
4365884 |
Phanerochaete chrysosporium KP135094_HHB_6251_Sp |
5306
|
1322805
|
4366539 |
Phlebia acanthocystis KY948767_FP150571 |
321830
|
3283998
|
4366204 |
Phlebia acerina KP135371_FP_135252_Sp |
98762
|
3111639
|
4366051 |
Phlebia acerina KP135372_HHB_11146_Sp |
98762
|
3111639
|
4366243 |
Phlebia acerina KP135378_FD_301 |
98762
|
3111639
|
4365896 |
Phlebia ailaoshanensis MH784918_CLZhao_3879 |
|
|
4366081 |
Phlebia ailaoshanensis MH784919_CLZhao_3882 |
|
|
4366461 |
Phlebia ailaoshanensis MH784920_CLZhao_3893 |
|
|
4366043 |
Phlebia ailaoshanensis MH784921_CLZhao_3897 |
|
|
4365908 |
Phlebia ailaoshanensis MH784922_CLZhao_3904 |
|
|
4366474 |
Phlebia ailaoshanensis MH784923_CLZhao_3905 |
|
|
4366275 |
Phlebia ailaoshanensis MH784924_CLZhao_3942 |
|
|
4365935 |
Phlebia ailaoshanensis MH784925_CLZhao_3953 |
|
|
4366318 |
Phlebia ailaoshanensis MH784926_CLZhao_3996 |
|
|
4366380 |
Phlebia ailaoshanensis MH784927_CLZhao_4036 |
|
|
4366037 |
Phlebia aurea HQ153409_Hallenberg_13259_GB |
|
|
4366036 |
Phlebia aurea KJ140614_CFMR_DLL2011_100 |
|
|
4365872 |
Phlebia aurea KJ140747_CFMR_DLL2011_263 |
|
|
4366120 |
Phlebia centrifuga KP135379_GB_1013 |
98765
|
3111388
|
4366348 |
Phlebia centrifuga KP135380_HHB_9239_Sp |
98765
|
3111388
|
4365947 |
Phlebia centrifuga KP135381_L_15541_Sp |
98765
|
3111388
|
4366470 |
Phlebia cf. hydnoidea KY948778 HHB1993sp |
|
|
4366372 |
Phlebia cf. subserialis KY948770 HHB8715sp |
|
|
4366228 |
Phlebia chrysocreas AY219367_FP_102161_sp |
194683
|
3198823
|
4366139 |
Phlebia chrysocreas KP135357_HHB_3946_Sp |
194683
|
3198823
|
4366336 |
Phlebia chrysocreas KP135358_HHB_6333_Sp |
194683
|
3198823
|
4366119 |
Phlebia floridensis KP135383_HHB_9905_Sp |
|
3262208
|
4366459 |
Phlebia floridensis KP135384_HHB_7175 |
|
3262208
|
4366430 |
Phlebia floridensis KP135385_HHB_6466_Sp |
|
3262208
|
4366263 |
Phlebia floridensis KP135386_FP_102562_T |
|
3262208
|
4366009 |
Phlebia lindtneri KY948772_GB501 |
98769
|
3198827
|
4366420 |
Phlebia livida AF141624_FCUG_2189 |
98770
|
1407459
|
4366106 |
Phlebia nantahaliensis KY948777_HHB2816sp |
|
|
4366132 |
Phlebia nothofagi KP135368_HHB_6906_Sp |
|
3279383
|
4366345 |
Phlebia nothofagi KP135369_HHB_4273_Sp |
|
3279383
|
4366368 |
Phlebia nothofagi KP135370_HHB_12067 |
|
3279383
|
4366033 |
Phlebia radiata AY854087_MJL_1198 |
5308
|
1225412
|
4366211 |
Phlebia radiata HQ604797_UBC_F19726 |
5308
|
1225412
|
4366135 |
Phlebia radiata KP135377_FD_85 |
5308
|
1225412
|
4365999 |
Phlebia rufa KP135374_HHB_14924 |
98773
|
3213829
|
4365998 |
Phlebia rufa KP135375_DR_60 |
98773
|
3213829
|
4366181 |
Phlebia sp. FD 427 KP135342 FD 427 |
|
|
4366269 |
Phlebia sp. PMM2070 ITS1 |
|
|
4366507 |
Phlebia subserialis AF141631_FCUG_1434 |
98776
|
1307571
|
4366167 |
Phlebia uda KP135361_FP_101544_Sp |
98779
|
3279384
|