@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128847 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4366495 |
Acremonium variecolor HE608647_CBS_130360 |
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4366118 |
Cordyceps farinosa AB080087_IFO_8108 |
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4366284 |
Sarocladium bacillisporum HE608639_CBS_425.67 |
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4365874 |
Sarocladium bacillisporum HG965001_CBS_119.79 |
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4366322 |
Sarocladium bacillisporum HG965002_CBS_212.79 |
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4366423 |
Sarocladium bacillisporum HG965003_CBS_388.67 |
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4365926 |
Sarocladium bacillisporum HG965004_CBS_485.67 |
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4366229 |
Sarocladium bacillisporum HG965005_CBS_787.69 |
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4366477 |
Sarocladium bactrocephalum HG965006_CBS_749.69 |
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4366042 |
Sarocladium bactrocephalum HG965007_UTHSC_09_384 |
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4366216 |
Sarocladium bifurcatum HG965008_CBS_383.73 |
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4365865 |
Sarocladium bifurcatum HG965009_UTHSC_05_3311 |
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4365961 |
Sarocladium bifurcatum HG965010_UTHSC_07_3446 |
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4366324 |
Sarocladium gamsii HG965014_CBS_425.73 |
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4365889 |
Sarocladium gamsii HG965015_CBS_707.73 |
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4366124 |
Sarocladium glaucum FN691445_UTHSC_07_1181 |
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4366375 |
Sarocladium glaucum FN691454_CBS_796.69 |
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4365994 |
Sarocladium glaucum HG965016_CBS_191.80 |
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4366027 |
Sarocladium glaucum HG965017_CBS_309.74 |
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4366003 |
Sarocladium glaucum HG965018_CBS_382.73 |
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4366141 |
Sarocladium glaucum HG965019_CBS_456.74 |
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4365950 |
Sarocladium glaucum HG965020_CBS_100350 |
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4366467 |
Sarocladium hominis HG965011_UTHSC_02_2564 |
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4365997 |
Sarocladium hominis HG965012_UTHSC_04_1034 |
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4366222 |
Sarocladium hominis HG965013_UTHSC_04_3464 |
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4366038 |
Sarocladium implicatum FN706540_UTHSC_02_1958 |
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4366295 |
Sarocladium implicatum FN706541_UTHSC_08_3180 |
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4366061 |
Sarocladium implicatum FN706553_MUCL_1412 |
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4365890 |
Sarocladium implicatum HG965021_CBS_397.70A |
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4366338 |
Sarocladium implicatum HG965022_CBS_825.73 |
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4366279 |
Sarocladium implicatum HG965023_CBS_959.72 |
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4365912 |
Sarocladium kiliense FN691446_MUCL_9724 |
45277
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1267046
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4366303 |
Sarocladium ochraceum HG965025_CBS_428.67 |
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4366102 |
Sarocladium oryzae HG965026_CBS_180.74 |
284135
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1325981
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4366184 |
Sarocladium oryzae HG965027_CBS_399.73 |
284135
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1325981
|
4365992 |
Sarocladium oryzae HG965028_CBS_414.81 |
284135
|
1325981
|
4365864 |
Sarocladium pseudostrictum HG965029_UTHSC_02_1892 |
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4366147 |
Sarocladium sp. CSN1202 ITS4 CS025 |
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4366319 |
Sarocladium sp. CSN1220 ITS4 CS025 |
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4366148 |
Sarocladium strictum FN691453_CBS_346.70 |
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4365983 |
Sarocladium strictum HG965030_CBS_640.75 |
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4365978 |
Sarocladium subulatum HG965031_MUCL_9939 |
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4366503 |
Sarocladium subulatum HG965032_UTHSC_07_110 |
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4366045 |
Sarocladium summerbellii HG965033_CBS_200.84 |
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4366011 |
Sarocladium summerbellii HG965034_CBS_430.70 |
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4366104 |
Sarocladium summerbellii HG965035_CBS_797.69 |
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4365975 |
Sarocladium summerbellii HG965036_CBS_891.73 |
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4366248 |
Sarocladium summerbellii HG965037_CBS_951.72 |
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4366516 |
Sarocladium terricola HG965038_CBS_134.71 |
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4365902 |
Sarocladium terricola HG965039_MUCL_12011 |
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4366502 |
Sarocladium terricola HG965040_MUCL_42865 |
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4366385 |
Sarocladium terricola HG965041_UTHSC_03_2933 |
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4366153 |
Sarocladium terricola HG965042_UTHSC_04_0956 |
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4366234 |
Sarocladium terricola HG965043_UTHSC_07_3260 |
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4366020 |
Sarocladium terricola HG965044_UTHSC_07_3667 |
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4366334 |
Sarocladium terricola HG965045_UTHSC_08_844 |
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4366536 |
Sarocladium zeae FN691451_CBS_800.69 |
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