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Authors Year Title Journal/Publisher
S10084 Bleidorn C., Podsiadlowski L., Zhong M. , et al. 2009 On the phylogenetic position of Myzostomida: can 77 genes get it wrong? BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10217 Bushley K., Turgeon B. 2010 Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10261 Verbruggen H., Maggs C., Saunders G. , et al. 2010 Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10542 Hoffman G.E., Sanchez puerta M.V., Delwiche C. 2011 Phylogenetic analysis of algal light-harvesting complex proteins and its implications for functional inference BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10701 Menkis A., Whittle C.A., Johannesson H. 2010 Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10811 Jörger K.M., Stöger I., Kano Y. , et al. 2010 On the origin of Acochlidia and other enigmatic euthyneuran gastropods, with implications for the systematics of Heterobranchia BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10856 Holstein N., Renner S.S. 2011 A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia (Cucurbitaceae) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10963 Schäferhoff B., Fleischmann A., Fischer E. , et al. 2010 Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11009 Alverson A., Beszteri B., Julius M.L. , et al. 2010 Resolving the identity crisis of a model species: The marine diatom Thalassiosira pseudonana is the freshwater diatom Cyclotella nana BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11020 Huang J., Lin C. 2011 Lineage-Specific Late Pleistocene Expansion of An Endemic Subtropical Gossamer-Wing Damselfly, Euphaea formosa in Taiwan BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11081 Wielstra B., Arntzen J. 2011 Unraveling the rapid radiation of crested newts (Triturus cristatus superspecies) using complete mitogenomic sequences BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11116 Omar F., Schneider H., Heinrichs J. , et al. 2011 Diversification of land plants: insights from a family-level phylogenetic analysis BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11199 Wodniok S., Brinkmann H., Glöckner G. , et al. 2011 Origin of land plants: Do conjugating green algae hold the key? BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11208 Sekimoto S., Rochon D., Long J.E. , et al. 2011 A multigene phylogeny of Olpidium and its implications for early fungal evolution BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11297 Roos C., Zinner D., Kubatko L. , et al. 2011 Nuclear versus Mitochondrial DNA: Evidence for Hybridization in Colobine Monkeys BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11469 Nakatani M., Miya M., Mabuchi K. , et al. 2011 Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11484 Oliveira C., Avelino G.S., Abe K.T. , et al. 2011 Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11505 Voelker G., Light J.E. 2011 Palaeoclimatic events, dispersal and migratory losses along the Afro-European axis as drivers of biogeographic distribution in Sylvia warblers. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11770 Stefka J., Hoeck P.E., Keller L.F. , et al. 2011 A hitchhikers guide to the Galápagos: co-phylogeography of Galápagos mockingbirds and their parasites BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11920 Delsuc F., Vizcaíno S.F., Douzery E.J. 2004 Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12179 Ödeen A., Hĺstad O., Alström P. 2011 Evolution of ultraviolet vision in the largest avian radiation - the passerines. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12288 Cai D., Rodriguez F., Teng Y. , et al. 2012 Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota). BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12339 De boer H., Schaefer H., Thulin M. , et al. 2012 Evolution and loss of petal fringes: a case study using a dated phylogeny of the snake gourds (Trichosanthes, Cucurbitaceae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12364 Leavitt S., Esslinger T.L., Divakar P.K. , et al. 2012 Miocene/Pliocene dominated diversification in the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12410 Andújar C., Serrano J., Gómez-zurita J. 2012 Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12411 D'angelo M.E., Dunstone M.A., Whisstock J.C. , et al. 2012 Perforin evolved from a gene duplication of MPEG1, followed by a complex pattern of gene gain and loss within Euteleostomi BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1262 Nickrent D., Blarer A., Qiu Y. , et al. 2004 Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12624 Willis S., Macrander J., Farias I. , et al. 2012 Simultaneous delimitation of species and quantification of interspecific hybridization in Amazonian peacock cichlids (genus Cichla) using multi-locus data BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12640 Parks M., Cronn R., Liston A. 2012 Separating the Wheat from the Chaff:: Mitigating the Effects of Noise in a Plastome Phylogenomic Data Set from Pinus L. (Pinaceae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12677 Hicks A.L., Duffy S.M. 2012 One Misdated Sequence of Rabbit Hemorrhagic Disease Virus Prevents Accurate Estimation of its Nucleotide Substitution Rate BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13159 Riess K., Oberwinkler F., Bauer R. , et al. 2013 High genetic diversity at the regional scale and possible speciation in Sebacina epigaea and S. incrustans BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13228 Schaefer H., Hechenleitner P., Santos-guerra A. , et al. 2012 Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13478 De sa R.O., Streicher J.W., Selenkoyela R. , et al. 2012 Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13567 Metallinou M., Arnold E.N., Crochet P. , et al. 2012 Conquering the Sahara and Arabian deserts: Systematics and biogeography of Stenodactylus geckos (Reptilia: Gekkonidae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13595 Van noort V., Bradatsch B., Arumugam M. , et al. 2013 Consistent mutational paths predict eukaryotic thermostability BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13609 Sultana T., Kim J., Lee S. , et al. 2012 Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13629 Weigand A.M., Jochum A., Slapnik R. , et al. 2013 Evolution of Microgastropods (Ellobioidea, Carychiidae) - Integrating taxonomic, phylogenetic and evolutionary hypotheses BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13741 Grewe F., Guo W., Gubbels E.A. , et al. 2013 Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13746 Krenek S., Schlegel M., Berendonk T.U. 2013 Convergent evolution of heat-inducibility during subfunctionalization of the Hsp70 gene family BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13756 Rovito S.M., Parra-olea G., Vásquez-almazán C.R. , et al. 2013 Deep divergences and extensive phylogeographic structure in a clade of lowland tropical salamanders BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13758 Chen Z. 2013 Characterization of Hairless (Hr) and FGF5 Genes Provides Insights into Molecular Basis of Hair Loss in Cetaceans BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13815 Merville A., Venner S., Henri H. , et al. 2013 Endosymbiont diversity among sibling weevil species competing for the same resource BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13870 Schlebusch C.M., Lombard M., Soodyall H. 2013 MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13878 Zhang Y., Depamphilis C.W. 2013 Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13911 Tschopp A., Riedel M., Kropf C. , et al. 2013 The evolution of host associations in the parasitic wasp genus Ichneumon (Hymenoptera: Ichneumonidae): convergent adaptations to host pupation sites BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13985 Aguilera F., Mcdougall C., Degnan B.M. 2013 Origin, evolution and classification of type-3 copper proteins: Lineage-specific gene expansions and losses across the Metazoa BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13990 Kober K.M., Bernardi G. 2013 Phylogenomics of Strongylocentrotid sea urchins BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14084 Igea J., Aymerich P., Fernández-gonzález A. , et al. 2013 Phylogeography and postglacial expansion of the endangered semi-aquatic mammal Galemys pyrenaicus BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14132 Bibi F. 2013 A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14197 Rigon F., Stach T., Federico C. , et al. 2013 Evolutionary diversification of secondary mechanoreceptor cells in Tunicata BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14212 Talevich E., Kannan N. 2013 Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14243 Jang T., Emadzade K., Parker J.S. , et al. 2013 Chromosomal diversification and karyotype evolution of diploids in the cytologically diverse genus Prospero (Hyacinthaceae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14299 Lecocq T., Dellicour S., Michez D. , et al. 2013 Scent of a break-up: phylogeography and reproductive trait divergences in the red-tailed bumblebee (Bombus lapidarius) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14373 Qi X., Chanderbali A., Wong G.K. , et al. 2013 Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14416 Grayson P.D., Civetta A. 2013 Positive selection in the adhesion domain of Mus sperm Adams through gene duplications and function-driven complex formation BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14426 Xu S., Yang Y., Zhou X. , et al. 2013 Adaptive evolution of the osmoregulation-related genes in cetaceans during secondary aquatic adaptation BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14431 Pfingstl T., Lienhard A., Jagersbacher-baumann J. 2013 Hidden in the mangrove forest: The cryptic intertidal mite Carinozetes mangrovi sp. n. (Acari, Oribatida, Selenoribatidae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14433 Diepeveen E.T., Kim F.D., Salzburger W. 2013 Sequence analyses of the distal-less homeobox gene family in East African cichlid fishes reveal signatures of positive selection BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14458 Sarkinen T.E., Bohs L., Olmstead R. , et al. 2013 A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14512 Lucatti A.F., Heusden, van A.W., Vos, de R.C. , et al. 2013 Differences in insect resistance between tomato species endemic to the Galapagos Islands BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14526 Sasaki G., Ishiwata K., Machida R. , et al. 2013 Molecular phylogenetic analyses support the monophyly of Hexapoda and suggest the paraphyly of Entognatha BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14611 Carretero-paulet L., Lipska A., Pérez-gil J. , et al. 2013 Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14655 Boykin L.M. 2013 Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)? Dating, diversification and biogeographic evidence revealed. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14683 Villarreal J., Renner S.S. 2013 Correlates of monoicy and dioicy in hornworts, the apparent sister group to vascular plants BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14718 Bagley J.C., Sandel M., Travis J. , et al. 2013 Paleoclimatic modeling and phylogeography of least killifish, Heterandria formosa: insights into Pleistocene expansion-contraction dynamics and evolutionary history of North American Coastal Plain freshwater biota BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14724 Mcleish M. 2013 Delayed colonisation of Acacia by thrips and the timing of host-conservatism and behavioural specialisation BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14731 Lin H., Hastings P.A. 2013 Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14787 Wan T., He K., Jiang X. 2013 Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae) implications for taxonomy and conservation BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14798 Turner B., Paun O., Munzinger J. , et al. 2013 Analyses of amplified fragment length polymorphism (AFLP) indicate rapid radiation of Diospyros species (Ebenaceae) endemic to New Caledonia BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14894 Beati L., Nava S., Burkman E.J. , et al. 2013 Amblyomma cajennense (Fabricius, 1787) (Acari: Ixodidae), the Cayenne tick: phylogeography and evidence for allopatric speciation BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14923 Ekanayake P.N., Rabinovich M., Guthridge K.M. , et al. 2013 Phylogenomics of fescue grass-derived fungal endophytes based on selected nuclear genes and the mitochondrial gene complement BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14979 Cao L. 2014 Phylogenetic analysis of CDK and cyclin proteins in premetazoan lineages BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15010 Deng J. 2013 Cophylogenetic relationships between Anicetus parasitoids (Hymenoptera: Encyrtidae) and their scale insect hosts (Hemiptera: Coccoide) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15034 Hollingsworth P.R., Simons A.M., Fordyce J.A. , et al. 2013 Explosive diversification following a benthic to pelagic shift in freshwater fishes BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15045 Hedtke S.M., Patiny S., Danforth B. 2013 The bee tree of life: a supermatrix approach to apoid phylogeny and biogeography. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15062 Szabova J., Yubuki N., Leander B.S. , et al. 2013 The evolution of paralogous enzymes MAT and MATX within the Euglenida and beyond BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15185 Ericson P.G., Klopfstein S., Irestedt M. , et al. 2014 Dating the diversification of the major lineages of Passeriformes (Aves) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15214 Bentley J., Verboom G.A., Bergh N.G. 2014 Erosive processes after tectonic uplift stimulate vicariant and adaptive speciation : evolution in an Afrotemperate-endemic paper daisy genus BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15260 Siu-ting K., Gower D., Pisani D. , et al. 2014 Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15281 Pozzi L., Disotell T.R., Masters J.C. 2014 A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15306 Dasgupta S., Basu G. 2014 Evolutionary insights about bacterial GlxRS from whole genome analyses: Is GluRS2 a chimera? BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15331 Nozaki H., Yamada T.K., Takahashi F. , et al. 2014 New "missing link" genus of the colonial volvocine green algae gives insights into the evolution of oogamy. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15354 Qi X., Yuan N., Comes H. , et al. 2014 A strong "filter" effect of the East China Sea land bridge for East Asia's temperate plant species: inferences from molecular phylogeography and ecological niche modelling of Platycrater arguta (Hydrangeaceae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15355 Chaw R.C., Zhao Y., Wei J. , et al. 2014 Intragenic homogenization and multiple copies of prey-wrapping silk genes in Argiope garden spiders BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15381 Schultheiß R., Van bocxlaer B., Riedel F. , et al. 2014 Disjunct Distributions of Freshwater Snails testify to a central Role of the Congo System in shaping biogeographical Patterns in Africa BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15468 Lo E., Duke N.C., Sun M. 2014 Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15494 Liu X., Ren D., Yang D. 2014 New transitional fossil snakeflies from China illuminate the early evolution of Raphidioptera BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15522 Bellec L., Clerissi C., Edern R. , et al. 2014 Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15597 Nguyen V.X., Detcharoen M., Tuntiprapas P. , et al. 2014 Genetic species identification and population structure of Halophila (Hydrocharitaceae) from the Western Pacific to the Eastern Indian Ocean BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15621 Wielgoss S., Gilabert A., Meyer A. , et al. 2014 Introgressive hybridization and latitudinal admixture clines in North Atlantic eels BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15642 Gu W., Li M., Xu Y. , et al. 2014 The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15742 Vitales D., Garnatje T., Pellicer J. , et al. 2014 The explosive radiation of Cheirolophus (Asteraceae, Cardueae) in Macaronesia BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15807 Yao Y., Dai Q., Li J. , et al. 2014 Genetic diversity and differentiation of the rhesus macaque (Macaca mulatta) population in western Sichuan, China, based on the second exon of the major histocompatibility complex class II DQB (MhcMamu-DQB1) alleles BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15822 Walters-conte K.B., Johnson D.L., Johnson W.E. , et al. 2014 The Dynamic Proliferation of CanSINEs Mirrors the Complex Evolution of Feliforms BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15827 Chang D., Duda T.F. 2014 Application of community phylogenetic approaches to understand gene expression: Differential exploration of venom gene space in predatory marine gastropods BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15917 Butler R., Sullivan C., Ezcurra M.D. , et al. 2014 New clade of enigmatic early archosaurs yields insights into early pseudosuchian phylogeny and the biogeography of the archosaur radiation BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15925 Planas E., Saupe E.E., Lima-ribeiro M.S. , et al. 2014 Ecological niche and phylogeography elucidate complex biogeographic patterns in Loxosceles rufescens (Araneae, Sicariidae) in the Mediterranean Basin BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1593 Kemler M., Goeker M., Begerow D. , et al. 2006 Implications of molecular characters for the phylogeny of the Microbotryaceae (Basidiomycota: Urediniomycetes) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15931 Nabeel-shah S., Ashraf K., Pearlman R.E. , et al. 2014 Molecular evolution of NASP and conserved histone H3/H4 transport pathway BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15970 Schubert F.R., Sobreira D.R., Janousek R.G. , et al. 2014 Dact genes are chordate specific regulators at the intersection of Wnt and Tgf-beta signaling BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16027 Huang H., Shi C., Liu Y. , et al. 2014 Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16177 Igea J., Aymerich P., Bannikova A.A. , et al. 2015 Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16186 Matos-maraví P., Núńez águila R., Peńa C. , et al. 2014 Causes of endemic radiation in the Caribbean: evidence from the historical biogeography and diversification of the butterfly genus Calisto (Nymphalidae: Satyrinae: Satyrini) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16298 Nürk N.M., Uribe-convers S., Gehrke B. , et al. 2014 Oligocene niche shift, Miocene diversification – cold tolerance and accelerated speciation rates in St. John’s Worts (Hypericum, Hypericaceae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16364 Wysocki W.P., Clark L.G., Attigala L. , et al. 2014 Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16541 Suzuki T.K., Tomita S., Sezutsu H. 2014 Gradual and contingent evolutionary emergence of leaf mimicry in butterfly wing patterns BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1663 Beck R., Bininda-emonds O., Cardillo M. , et al. 2006 A higher-level MRP supertree of placental mammals BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16652 Litsios G., Salamin N. 2014 Hybridisation and diversification in the adaptive radiation of clownfishes BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16938 Jones G.D., Williams E.P., Place A.R. , et al. 2015 The alveolate translation initiation factor 4E family reveals a custom toolkit for translational control in core dinoflagellates BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16954 Grace O.M., Buerki S., Symonds M.R. , et al. 2015 Evolutionary history and leaf succulence as explanations for medicinal use in aloes and the global popularity of Aloe vera BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16971 Kweon O., Kim S., Blom J. , et al. 2015 Comparative functional pan-genome analyses to build connections between genomic dynamics and phenotypic evolution in polycyclic aromatic hydrocarbon metabolism in the genus Mycobacterium BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17122 Dahan R.A., Duncan R.P., Wilson A.C. , et al. 2015 Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: Sternorrhyncha) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17154 Hettiarachchige I.K., Ekanayake P.N., Mann R.C. , et al. 2015 Phylogenomics of asexual Epichloe fungal endophytes forming associations with perennial ryegrass (Lolium perenne L.) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17392 Abrahamczyk S., Renner S.S. 2015 The temporal build-up of hummingbird/plant mutualisms in North America and temperate South America BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17486 Noda-garcă­a L. 2015 Insights into the evolution of enzyme substrate promiscuity after the discovery of (beta, alpha)8 isomerase evolutionary intermediates from a diverse metagenome BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1779 Rüber L., Kottelat M., Tan H. , et al. 2007 Evolution of miniaturization and the phylogenetic position of Paedocypris, comprising the world's smallest vertebrate. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17878 Kovalchuk A., Kohler A., Lee Y. , et al. 2015 Diversity and evolution of ABC proteins in mycorrhiza-forming fungi BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1794 Struck T., Schult N., Kusen T. , et al. 2007 Annelid Phylogeny and the Status of Sipuncula and Echiura BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1806 Renner S.S., Schaefer H., Kocyan A. 2007 Phylogenetics of Cucumis (Cucurbitaceae): C. sativus (cucumber) belongs in an Asian/Australian clade far from C. melo (melon) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S18146 Blaimer B.B., Brady S.G., Schultz T.R. , et al. 2015 Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S18291 Pirie M.D., Oliver E., Mugrabi de kuppler A. , et al. 2016 The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S18607 Le pechon T., He H., Zhang L. , et al. 2015 Using a multilocus phylogeny to test morphology-based classifications of Polystichum (Dryopteridaceae), one of the largest fern genera BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S18919 Cao Y., Qiu Y., Comes H.P. , et al. 2016 Evolution of East Asia’s Arcto-Tertiary relict Euptelea (Eupteleaceae) shaped by Late Neogene vicariance and Quaternary climate change BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1928 Sanchez-puerta M., Cho Y., Mower J. , et al. 2008 Horizontal transfer of cox1 group I intron among flowering plants: assessing the variation in the coconversion tract BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1937 Zhu X., Chase M., Qiu Y. , et al. 2007 Mitochondrial matR Sequences help to resolve deep phylogenetic relationships in rosids BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1950 Barkman T., Mcneal J.R., Lim S. , et al. 2007 Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S19838 Ng J., Ossip-klein A.G., Glor R.E. 2016 Adaptive signal coloration maintained in the face of gene flow in a Hispaniolan Anolis lizard BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1991 Poux C., Madsen O., Glos J. , et al. 2008 Molecular phylogeny and divergence times of Malagasy tenrecs: influence of data partitioning and taxon sampling on dating analyses BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S19979 Yamashita S., Arakaki Y., Kawai-toyooka H. , et al. 2016 Alternative evolution of a spheroidal colony in volvocine algae: developmental analysis of embryogenesis in Astrephomene (Volvocales, Chlorophyta) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S20219 Banag C.I., Mouly A., Alejandro G.J. , et al. 2016 Ixora (Rubiaceae) on the Philippines – crossroad or cradle ? BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S20239 Lu L., Leigh brown A.J., Lycett S.J. 2016 Quantifying predictors for the spatial diffusion of avian influenza virus in China BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S20429 Ishengoma E., Agaba M. 2017 Evolution of Toll-like receptors in the context of terrestrial ungulates and cetaceans diversification BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S20469 Koch R.A., Wilson A.W., Sene O. , et al. 2017 Resolved phylogeny and biogeography of the root pathogen Armillaria and its asteroid relative, Guyanagaster BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S20496 Martins R.F., Fickel J., Le M. , et al. 2017 Phylogeography of red muntjacs reveals three distinct mitochondrial lineages. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2068 Evans N., Lindner A., Raikova E. , et al. 2008 Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2132 Maruyama M., Steiner F., Stauffer C. , et al. 2008 A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungiculture BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S21468 Arakaki Y., Fujiwara T., Kawai-toyooka H. , et al. 2017 Evolution of cytokinesis-related protein localization during the emergence of multicellularity in volvocine green algae. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S21557 Abalde S., Tenorio M.J., Afonso C.M. , et al. 2017 Phylogenetic relationships of cone snails endemic to Cabo Verde based on mitochondrial genomes BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S21599 Perez-moreno J.L., Balazs G., Wilkins B. , et al. 2017 The role of isolation on contrasting phylogeographic patterns in two cave crustaceans. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S21879 Prebus M.M. 2017 Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (Hymenoptera: Formicidae) BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S21963 Missbach S., Aleksic D., Blaschke L. , et al. 2018 Alternative splicing after gene duplication drives CEACAM1-paralog diversification in the horse BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S22051 Grandi N., Cadeddu M., Blomberg J. , et al. 2017 HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2214 Belokobylskij S., Mori M., Quicke D. , et al. 2008 Evolution of the parasitic wasp subfamily Rogadinae (Braconidae): phylogeny and evolution of lepidopteran host ranges and mummy characteristics. BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S23146 Schott E.J., Di lella S., Bachvaroff T.R. , et al. 2019 Lacking catalase, a protistan parasite draws on its photosynthetic ancestry to complete an antioxidant repertoire for intracellular survival BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S23531 Springer M.S., Gatesy J., Emerling C.A. , et al. 2019 Odontogenic Ameloblast-associated (ODAM) is Inactivated in Toothless/Enamelless Placental Mammals and Toothed Whales BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S23649 Lloyd evans D., Joshi S.V., Wang J. 2019 Whole Chloroplast Genome and Gene Locus Phylogenies Reveal the Taxonomic Placement and Relationship of Tripidium (Panicoideae: Andropogoneae) to Sugarcane BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S23684 Xuan Y., Wu Y., Li P. , et al. 2018 Classification and evolution of Morus based on phylogenetic analyses of ITS and cpDNA sequences BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2376 Beck R., Bininda-emonds O., Ferguson S. , et al. 2007 Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S23894 Yamashita S., Nozaki H. 2019 Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S9967 Spinks P., Thomson R.C., Lovely G. , et al. 2009 Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from Emydid turtles. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File