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Authors Year Title Journal/Publisher
S10115 Simon S., Strauss S., Von haeseler A. , et al. 2009 A phylogenomic approach to resolve the basal pterygote divergence Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10148 Simon D., Kelchner S., Zimmerly S. 2009 A broad-scale phylogenetic analysis of group II intron RNAs and intron-encoded reverse transcriptases Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10281 Valles Y., Giani V., Cho S. , et al. 2010 Evolutionary dynamics of the Wnt gene family: a lophotrochozoan perspective. Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10436 Nesnidal M., Helmkampf M., Bruchhaus I. , et al. 2010 Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10454 Evans N.M., Cartwright P. 2010 The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Datasets Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S10507 Meusemann K., Von reumont B., Simon S. , et al. 2010 A phylogenomic approach to resolve the arthropod tree of life Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10791 Casewell N.R., Wagstaff S.C., Harrison R.A. , et al. 2010 Gene tree parsimony of multi-locus snake venom protein families reveals species tree conflict as a result of multiple parallel gene loss Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S11359 Groussin M. 2011 Adaptation to Environmental Temperature is a Major Determinant of Molecular Evolutionary Rates in Archaea Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S11394 Mcdonald T.R., Dietrich F., Lutzoni F. 2011 Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S11647 Collins R.E., Higgs P. 2012 Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S11961 Schneider A., Cannarozzi G.M. 2009 Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12032 Nishiyama T., Wolf P.G., Kugita M. , et al. 2004 Chloroplast Phylogeny Indicates that Bryophytes are Monophyletic. Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12097 Derelle R., Lang B.F. 2011 Rooting the eukaryotic tree with mitochondrial and bacterial proteins Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S1256 Staats M., Baarlen P., Kan J. 2004 Molecular Phylogeny of the plant pathogenic genus Botrytis and the evolution of host specificity Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S13735 Hiraide R., Kawai-toyooka H., Hamaji T. , et al. 2013 The Evolution of Male-Female Sexual Dimorphism Predates the Gender-Based Divergence of the Mating Locus Gene MAT3/RB Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13801 Soza V.L., Haworth K., Di stilio V.S. 2013 Timing and consequences of recurrent polyploidy in meadow-rues (Thalictrum, Ranunculaceae) Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1475 Rychel A., Smith S., Shimamoto H. , et al. 2005 Evolution and Development of the Chordates: Collagen and Pharyngeal Cartilage Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14872 Jarvis D.E., Ryu C., Beilstein M.A. , et al. 2014 Distinct roles for SOS1 in the convergent evolution of salt tolerance in Eutrema salsugineum and Schrenkiella parvula Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S14911 Cho S., Valles Y., Weisblat D. 2013 Differential expression of conserved germ line markers, and delayed segregation of male and female primordial germ cells, in a hermaphrodite, the leech Helobdella Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S15463 Massoumi alamouti S., Haridas S., Feau N. , et al. 2014 Comparative genomics of the pine pathogens and beetle symbionts in the genus Grosmannia Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S1647 Kullberg M., Nilsson M., Arnason U. , et al. 2006 Housekeeping Genes for Phylogenetic Analysis of Eutherian Relationships Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S16473 Huang Y., Kendall T., Forsythe E.S. , et al. 2015 Ancient origin and recent innovations of RNA Polymerase IV and V Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S18129 Rausher M., Huang J. 2015 Threonine Deaminase Positive Selection Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S18202 Huang C., Sun R., Hu Y. , et al. 2015 Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S1843 Bleidorn C., Eeckhaut I., Podsiadlowski L. , et al. 2007 Mitochondrial genome and nuclear sequence data support Myzostomida as part of the annelid radiation Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S18548 Derelle R., López-garcía P., Timpano H. , et al. 2016 A phylogenomic framework to study the diversity and evolution of stramenopiles. Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1907 Hausdorf B., Helmkampf M., Meyer A. , et al. 2007 Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S19293 Wang Y., White M.M., Kvist S. , et al. 2016 Genome-wide survey of gut fungi (Harpellales) reveals the first horizontally transferred ubiquitin gene from a mosquito host Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S19664 Huang C., Zhang C., Liu M. , et al. 2016 Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S1994 Struck T., Fisse F. 2008 Phylogenetic position of Nemertea derived from phylogenomic data Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S20991 Jia H., Kolaczkowski O., Rolland J. , et al. 2017 Increased affinity for RNA targets evolved early in animal and plant Dicer lineages through different structural mechanisms Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S22054 Xiang Y., Huang C., Hu Y. , et al. 2017 Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S24158 Ramos-silva P., Serrano M., Henriques A.O. 2019 From root to tips: sporulation evolution and specialization in Bacillus subtilis and the intestinal pathogen Clostridioides difficile Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S284 Bruns T., Szaro T. 1992 Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S285 Hibbett D. 1996 Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S346 Hayasaka K., Gojobori T., Horai S. 1988 Molecular phylogeny and evolution of primate mitochondrial DNA. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S359 De sú R., Hillis D.M. 1990 Phylogenetic relationships of the pipid frogs Xenopus and Silurana: an integration of ribosomal DNA and morphology. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S362 Hedges S., Moberg K., Maxson L. 1990 Tetrapod phylogeny inferred from 18s and 28s ribosomal RNA sequences and a review of the evidence for amniote relationships. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S401 Nunn G., Stanley S. 1998 Body size effects and rates of cytochrome b evolution in tube-nosed seabirds. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S414 An S., Mpps B., Weber K. , et al. 1999 The origin and evolution of green algal and plant actins. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S416 Friedlander T., Regier J., Mitter C. , et al. 1996 A nuclear gene for higher level phylogenetics: Phosphoenolpyruvate carboxykinase tracks Mesozoic-age divergences within Lepidoptera (Insecta). Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S663 Campbell D., Brower A., Pierce N. 2000 Molecular Evolution of the Wingless Gene and Its Implications for the Phylogenetic Placement of the Butterfly Family Riodinidae (Lepidoptera: Papilionoidea). Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S795 Simmons M., Randle C., Freudenstein J. , et al. 2002 Limitations of Relative Apparent Synapomorphy Analysis (RASA) for measuring phylogenetic signal. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S800 Omilian A., Taylor D. 2001 Rate acceleration and long-branch attraction in a conserved gene of cryptic daphniid (Crustacea) species. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S927 Kasuga T., White T., Taylor J. 2002 Estimation of Nucleotide Substitution Rates in Eurotiomycete Fungi. Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File