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Authors Year Title Journal/Publisher
S1000 Rokas A., Atkinson R., Webster L. , et al. 2003 Out of Anatolia: Longitudinal gradients in genetic diversity support a Turkish origin for a circum-mediterranean oak gallwasp Andricus quercustozae. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1003 Schurko A., Mendoza L., Levesque C. , et al. 2003 A molecular phylogeny of Pythium insidiosum. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10154 Spinks P., Thomson R.C., Shaffer H. 2009 Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10222 Willis S., Nunes M., Montaña C. , et al. 2010 The Casiquiare River acts as a dispersal corridor between the Amazonas and Orinoco River basins: Biogeographic analysis of the genus Cichla. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10423 Weigt L.A., Crawford A., Rand A. , et al. 2005 Biogeography of the Túngara Frog, Physalaemus pustulosus: a Molecular Perspective. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10455 Sarnat E.M., Moreau C.S. 2011 Biogeography and morphological evolution in a Pacific island ant radiation Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10492 Swain T.D. 2010 Evolutionary transitions in symbioses: dramatic reductions in bathymetric and geographic ranges of Zoanthidea coincide with loss of symbioses with invertebrates Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1052 Voglmayr H. 2003 Phylogenetic relationships of Peronospora and related genera based on nuclear ribosomal ITS sequences. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1055 Santos S., Shearer T., Hannes A. , et al. 2003 Fine-scale specificity and diversity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) in the Caribbean. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1063 Kasuga T., White T., Koenig G. , et al. 2003 Phylogeography of the Fungal Pathogen Histoplasma capsulatum. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1088 De koker T., Nakasone K., Haarhof J. , et al. 2003 Phylogenetic relationships of the genus Phanerochaete inferred from the internal transcribed spacer region. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10954 Roe A.D., Rice A.V., Coltman D.W. , et al. 2010 Comparative phylogeography, genetic differentiation, and contrasting reproductive modes in three fungal symbionts of a multipartite bark beetle symbiosis Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11058 Kiss L., Pintye A., Kovács G. , et al. 2011 Temporal isolation explains host-related genetic differentiation in a group of widespread mycoparasitic fungi Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1111 Urban A., Neuner-plattner I., Krisai-greilhuber I. , et al. 2004 Geodendron, a new form genus to accomodate anamorphs linked to the genus Tuber. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1114 Lutz M., Bauer R., Begerow D. , et al. 2004 Tuberculina - Thanatophytum/Rhizoctonia crocorum - Helicobasidium: A unique mycoparasitic-phytoparasitic life strategy. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1120 Peterson S. 2004 Multilocus DNA sequence analysis shows that Penicillium biourgeianum Zaleski is a distinct species closely related to P. brevicompactum and P. olsonii. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11269 Gonthier P., Garbelotto M. 2011 Amplified fragment length polymorphism and sequence analyses reveal massive gene introgression from the European fungal pathogen Heterobasidion annosum into its introduced congener H. irregulare Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1129 Ivors K., Hayden K., Bonants P. , et al. 2004 AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11355 Massoumi alamouti S., Wang V., Diguistini S. , et al. 2011 Gene genealogies reveal cryptic species and host preferences for the pine fungal pathogen Grosmannia clavigera Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11413 Xiang X. 2011 Genetic differentiation and phylogeographical structure of the Brachionus calyciflorus complex in eastern China Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1151 Inderbitzin P., Lim S., Volkmann-kohlmeyer B. , et al. 2004 The phylogenetic position of Spathulospora based on DNA sequences from dried herbarium material. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1153 Yoder A.D., Yang Z. 2004 Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1159 Kasanen R., Hantula J., Ostry M. , et al. 2004 North American populations of Entoleuca mammata are genetically more variable than populations in Europe. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1169 Menkis A., Allmer J., Vasiliauskas R. , et al. 2004 Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11744 Elias M., Joron M., Willmott K. , et al. 2009 Out of the Andes: patterns of diversification in clearwing butterflies. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1175 Eberhardt U., Verbeken A. 2004 Sequestrate Lactarius species from tropical Africa: L. angiocarpus nov. sp. and L. dolichocaulis nov. comb. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1176 Blanco O., Crespo A., Divakar P.K. , et al. 2004 Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11818 Oberhofer M., Leuchtmann A. 2012 Genetic diversity in epichloid endophytes of Hordelymus europaeus suggests repeated host jumps and interspecific hybridizations Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1194 Voglmayr H., Riethmuller A., Gker M. , et al. 2004 Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew fungi with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12065 Unmack P.J., Barriga J.P., Battini M.A. , et al. 2012 Phylogeography of the catfish Hatcheria macraei reveals a negligible role of drainage divides in structuring populations. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12066 Prado C.P., Haddad C., Zamudio K.R. 2011 Cryptic lineages and Pleistocene population expansion in a Brazilian Cerrado frog Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12229 Scheel B.M., Hausdorf B. 2012 Survival and differentiation of subspecies of the land snail Charpentieria itala in mountain refuges in the Southern Alps Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12425 Lu B., Zheng Y., Murphy R. , et al. 2012 Coalescence patterns of endemic Tibetan species of stream salamanders (Hynobiidae: Batrachuperus) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12492 Zhao Y., Ma W., Dai Q. , et al. 2012 Species delineation, phylogenetic relationship, and biogeographic divergence of Smilax hispida group with eastern Asian-North American disjuction Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12644 Chan L.M., Choi D., Raselimanana A.P. , et al. 2012 Defining spatial and temporal patterns of phylogeographic structure in Madagascar’s iguanid lizards (genus Oplurus) Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12670 Wang Q., Liu W., Liti G. , et al. 2012 Saccharomyces cerevisiae occurs in surprisingly diverged populations in natural environments remote from human activity Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12689 Pérez G., Slippers B., Wingfield M.J. , et al. 2012 Cryptic species, native populations and biological invasions by a eucalypt forest pathogen Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12828 Etter R.J., Boyle E.E., Glazier A. , et al. 2011 Phylogeography of a pan-Atlantic abyssal protobranch bivalve: implications for evolution in the Deep Atlantic. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13399 Charlton N., Craven K., Afkhami M. , et al. 2012 Genetic diversity in epichloid endophytes of Bromus laevipes provides evidence for independent hybridization events Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13472 Koch H., Schmid-hempel P. 2013 Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13538 Bonito G.M. 2010 A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13583 Fan D., Yue J., Nie Z. , et al. 2013 Phylogeography of Sophora davidii (Leguminosae) across the "Tanaka-Kaiyong Line", an important phytogeographic boundary in Southwest China Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1367 Moon C., Craven K., Leuchtmann A. , et al. 2004 Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13674 Unmack P.J., Hammer M., Adams M. , et al. 2013 The Role of Continental Shelf Width in Determining Freshwater Phylogeographic Patterns in Southeastern Australian Pygmy Perches (Teleostei: Percichthyidae) Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13709 Tedersoo L., Arnold A., Hansen K. 2012 Novel aspects in the life cycle and biotrophic interactions in Pezizomycetes (Ascomycota, Fungi) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13724 Li J., Ó foighil D., Park J. 2013 Triton’s trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia’s three temperate biogeographic provinces Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13731 Van houte S., Ros V.I., Van oers M.M. 2013 Walking with insects: Molecular mechanisms behind parasitic manipulation of host behaviour Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1374 Taylor D., Sprenger H., Ishida S. 2005 Geographic and phylogenetic evidence for dispersed nuclear introgression in a daphniid with sexual propagules Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13763 Ohtani M., Kondo T., Tani N. , et al. 2013 Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in Southeast Asia Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13814 Ji B., Gehring C.A., Wilson G.W. , et al. 2013 Patterns of diversity and adaptation in Glomeromycota from three prairie grasslands Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14078 Diaz-lameiro A.M., Oleksyk T.K., Bird-pico F.J. , et al. 2013 Colonization of Islands in the Mona Passage by Endemic Dwarf Geckoes (genus Sphaerodactylus) Reconstructed with Mitochondrial Phylogeny Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14129 Cowart D.A., Huang C., Arnaud-haond S. , et al. 2013 Restriction to large-scale gene flow versus regional panmixia among cold seep Escarpia spp. (Polychaeta, Siboglinidae) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1420 Alsos I., Engelskjøn T., Gielly L. , et al. 2005 Impact of ice ages on circumpolar molecular diversity: insight from an ecological key species Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14297 Ristau K., Steinfartz S., Traunspurger W. 2013 First evidence of cryptic species diversity and significant population structure in a widespread freshwater nematode morphospecies (Tobrilus gracilis) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14483 Martinkova N., Barnett R., Cucchi T. , et al. 2013 Divergent evolutionary processes associated with colonization of offshore islands Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15043 David-palma M., Libkind D., Sampaio J.P. 2013 Global distribution, diversity hotspots and niche transitions of an astaxanthin-producing eukaryotic microbe Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15268 Boivin T., Henri H., Vavre F. , et al. 2014 Epidemiology of asexuality induced by the endosymbiotic Wolbachia across phytophagous wasp species: host plant specialization matters Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15442 Gross A., Hosoya T., Queloz V. 2014 Population structure of the invasive forest pathogen Hymenoscyphus pseudoalbidus Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15695 Bonatelli I.A., Perez M.F., Peterson A. , et al. 2014 Interglacial microrefugia and diversification of a cactus species complex: phylogeography and paleodistributional reconstructions for Pilosocereus aurisetus and allies Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16381 Blackburn G.S., Maddison W.P. 2014 Stark sexual display divergence among jumping spider populations in the face of gene flow Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1686 Trusty J., Olmstead R., Santos-guerra A. , et al. 2005 Molecular phylogenetics of the Macaronesian-endemic genus Bystgropogon (Lamiaceae): palaeoislands, ecological shifts, and interisland colonizations Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1713 Dixon C., Schönswetter P., Schneeweiss G. 2007 Traces of ancient range shifts in a mountain plant group (Androsace halleri complex, Primulaceae) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17331 Leavitt S., Kraichak E., Nelsen M. , et al. 2015 Fungal specificity and selectivity for algae play a major role in determining lichen partnerships across diverse ecogeographic regions in the lichen-forming family Parmeliaceae (Ascomycota) Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1870 Leaché A., Mulcahy D. 2007 Phylogeny, divergence times, and species limits of spiny lizards (Sceloporus magister species group) in western North America deserts and Baja California Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S20232 Matos-marav? P., Matzke N., Clouse R.M. , et al. 2018 Trans-Pacific long-distance dispersal and the interplay between abiotic factors and ecology shaped the diversity of Indo-Pacific trap-jaw ants Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2056 Zarza E., Reynoso V., Emerson B. 2008 Diversification in the northern neotropics: Mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata, and related species Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2172 Halanych K., Mahon A., Norenburg J. , et al. 2008 Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae). Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2213 Collevatti R., Colli G., Giugliano L. , et al. 2008 Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S22172 Grum-grzhimaylo A.A., Falkoski D., Van den heuvel J. , et al. 2018 The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2228 Johnson J., Jones C. 2008 Phylogeography of the livebearer Xenophallus umbratilis (Teleostei: Poeciliidae): glacial cycles and sea level change predict diversification of a freshwater tropical fish. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2255 Halanych K., Schroedl M., Wilson N. 2009 Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slug Doris kerguelenensis (Mollusca, Nudibranchia) Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S563 Driver F., Milner R., Trueman J. 2000 A taxonomic revision of Metarhizium based on a phylogenetic analysis of ribosomal DNA sequence data. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S659 Pazoutova S. 2001 The phylogeny and evolution of the genus Claviceps. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S672 Lieckfeldt E., Kullnig C., Kubicek C. , et al. 2001 Trichoderma aureoviride: phylogenetic position and characterization. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S717 Ekman S. 2001 Molecular phylogeny of the Bacidiaceae (Lecanorales, lichenized Ascomycota). Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S763 Chou H., Wu W. 2002 Phylogenetic Analysis of Internal Transcribed Spacer Regions of the Genus Alternaria, and the significance of filament-beaked conidia Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S817 Lumbsch H., Lindemuth R. 2001 Major lineages of Dothideomycetes (Ascomycota) inferred from SSU and LSU rDNA sequences. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S827 Agretious thomas K., Peintner U., Moser M. , et al. 2002 Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S835 Deckert R., Hsiang T., Peterson R. 2002 Genetic relationships of endophytic Lophodermium nitens isolates from needles of Pinus strobus L. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S865 Rokas A., Atkinson R., Nieves-aldrey J. , et al. 2002 The incidence and diversity of Wolbachia in gallwasps (Hymenoptera; Cynipidae) on oak. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S872 Bergerow D., Bauer R., Oberwinkler F. 2001 Muribasidiospora: Microstromatales or Exobasidiales? Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S934 Sauer M., Lu P., Sangari R. , et al. 1992 Estimating polyketide metabolic potential among non-sporulating fungal endophytes of Vaccinium macrocarpon. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S941 Kelch D., Baldwin B.G. 2002 Phylogeny and ecological radiation of New World thistles (Cirsium, Cardueae -- Compositae) based on ITS and ETS rDNA sequence data. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S951 Bills G., Arias R., Reyes M. , et al. 2001 Merimbla humicoloides sp.nov. from conifer forest soil of Veracruz State, Mexico. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S958 Mwenje E., Wingfield B.D., Coetzee M. , et al. 2003 Molecular characterisation of Armillaria species from Zimbabwe. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S976 Camara M., Ramaley A., Castlebury L. , et al. 2003 Neosphaeria and Phaeosphaeriopsis, segregates of Paraphaeosphaeria. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S992 Peintner U., Ladurner H., Simonini G. 2003 Xerocomus cisalpinus sp. nov. and the delimitation of species in the Xerocomus chrysenteron complex based on morphology and rDNA-LSU sequences. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S9991 Virgilio M., Fauvelot C., Costantini F. , et al. 2009 Phylogeography of the common ragworm Hediste diversicolor (Polychaeta: Nereididae) reveals cryptic diversity and multiple colonisation events across its distribution. Molecular Ecology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File