@ARTICLE{TreeBASE2Ref18728,
author = {Pawan K Dadheech and Andreas Ballot and Peter Casper and Kiplagat Kotut and Eberto Novelo and Brook Lemma and Thomas Pr?schold and Lothar Krienitz},
title = {Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences.},
year = {2010},
keywords = {Cyanobacteria, Oscillatoriales, Arthrospira, Phylogeny, Phycocyanin operon, ITS, Mexico, Africa, India},
doi = {10.2216/09-71.1},
url = {},
pmid = {},
journal = {Phycologia},
volume = {49},
number = {4},
pages = {361--372},
abstract = {Arthrospira comprises multicellular, cylindrical, usually screw-like coiled trichomes and is cultivated commercially. In this study, 33 new strains of Arthrospira isolated from plankton samples collected in Mexico, East Africa and India were investigated and compared to 53 strains or samples of earlier considerations. The study included observations of morphological features and molecular phylogenetic analyses based on nucleotide sequences of internal transcribed spacer (ITS) between 16S rRNA and 23S rRNA genes and partial sequences of beta and alpha subunits including intergenic spacer (cpcBA-IGS) of phycocyanin operon. Morphological traits of Arthrospira, such as trichome width, type of coiling and apical cell were not always consistent in culture conditions. It was revealed that Arthrospira phylogeny based on cpcBA-IGS locus was broadly comparable to the ITS region as both phylogenetic trees derived from nucleotide sequences could be divided into two main clusters. Cluster I comprised sequences from American strains mainly while cluster II contained the sequences of the strains originating from Africa and Asia chiefly. Both genetic regions of the strains investigated in the present study coincidently showed a significant sequence divergence among Arthrospira strains from East Africa, India and Mexico indicating possible distinct evolutionary lineages. }
}
Citation for Study 10238
Citation title:
"Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences.".
This study was previously identified under the legacy study ID S2594
(Status: Published).
Citation
Dadheech P., Ballot A., Casper P., Kotut K., Novelo E., Lemma B., Pr?schold T., & Krienitz L. 2010. Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences. Phycologia, 49(4): 361-372.
Authors
-
Dadheech P.
-
Ballot A.
-
Casper P.
-
Kotut K.
-
Novelo E.
-
Lemma B.
-
Pr?schold T.
-
Krienitz L.
Abstract
Arthrospira comprises multicellular, cylindrical, usually screw-like coiled trichomes and is cultivated commercially. In this study, 33 new strains of Arthrospira isolated from plankton samples collected in Mexico, East Africa and India were investigated and compared to 53 strains or samples of earlier considerations. The study included observations of morphological features and molecular phylogenetic analyses based on nucleotide sequences of internal transcribed spacer (ITS) between 16S rRNA and 23S rRNA genes and partial sequences of beta and alpha subunits including intergenic spacer (cpcBA-IGS) of phycocyanin operon. Morphological traits of Arthrospira, such as trichome width, type of coiling and apical cell were not always consistent in culture conditions. It was revealed that Arthrospira phylogeny based on cpcBA-IGS locus was broadly comparable to the ITS region as both phylogenetic trees derived from nucleotide sequences could be divided into two main clusters. Cluster I comprised sequences from American strains mainly while cluster II contained the sequences of the strains originating from Africa and Asia chiefly. Both genetic regions of the strains investigated in the present study coincidently showed a significant sequence divergence among Arthrospira strains from East Africa, India and Mexico indicating possible distinct evolutionary lineages.
Keywords
Cyanobacteria, Oscillatoriales, Arthrospira, Phylogeny, Phycocyanin operon, ITS, Mexico, Africa, India
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S10238
- Other versions:
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- Show BibTeX reference
@ARTICLE{TreeBASE2Ref18728,
author = {Pawan K Dadheech and Andreas Ballot and Peter Casper and Kiplagat Kotut and Eberto Novelo and Brook Lemma and Thomas Pr?schold and Lothar Krienitz},
title = {Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences.},
year = {2010},
keywords = {Cyanobacteria, Oscillatoriales, Arthrospira, Phylogeny, Phycocyanin operon, ITS, Mexico, Africa, India},
doi = {10.2216/09-71.1},
url = {},
pmid = {},
journal = {Phycologia},
volume = {49},
number = {4},
pages = {361--372},
abstract = {Arthrospira comprises multicellular, cylindrical, usually screw-like coiled trichomes and is cultivated commercially. In this study, 33 new strains of Arthrospira isolated from plankton samples collected in Mexico, East Africa and India were investigated and compared to 53 strains or samples of earlier considerations. The study included observations of morphological features and molecular phylogenetic analyses based on nucleotide sequences of internal transcribed spacer (ITS) between 16S rRNA and 23S rRNA genes and partial sequences of beta and alpha subunits including intergenic spacer (cpcBA-IGS) of phycocyanin operon. Morphological traits of Arthrospira, such as trichome width, type of coiling and apical cell were not always consistent in culture conditions. It was revealed that Arthrospira phylogeny based on cpcBA-IGS locus was broadly comparable to the ITS region as both phylogenetic trees derived from nucleotide sequences could be divided into two main clusters. Cluster I comprised sequences from American strains mainly while cluster II contained the sequences of the strains originating from Africa and Asia chiefly. Both genetic regions of the strains investigated in the present study coincidently showed a significant sequence divergence among Arthrospira strains from East Africa, India and Mexico indicating possible distinct evolutionary lineages. }
}
- Show RIS reference
TY - JOUR
ID - 18728
AU - Dadheech,Pawan K
AU - Ballot,Andreas
AU - Casper,Peter
AU - Kotut,Kiplagat
AU - Novelo,Eberto
AU - Lemma,Brook
AU - Pr?schold,Thomas
AU - Krienitz,Lothar
T1 - Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences.
PY - 2010
KW - Cyanobacteria
KW - Oscillatoriales
KW - Arthrospira
KW - Phylogeny
KW - Phycocyanin operon
KW - ITS
KW - Mexico
KW - Africa
KW - India
UR -
N2 - Arthrospira comprises multicellular, cylindrical, usually screw-like coiled trichomes and is cultivated commercially. In this study, 33 new strains of Arthrospira isolated from plankton samples collected in Mexico, East Africa and India were investigated and compared to 53 strains or samples of earlier considerations. The study included observations of morphological features and molecular phylogenetic analyses based on nucleotide sequences of internal transcribed spacer (ITS) between 16S rRNA and 23S rRNA genes and partial sequences of beta and alpha subunits including intergenic spacer (cpcBA-IGS) of phycocyanin operon. Morphological traits of Arthrospira, such as trichome width, type of coiling and apical cell were not always consistent in culture conditions. It was revealed that Arthrospira phylogeny based on cpcBA-IGS locus was broadly comparable to the ITS region as both phylogenetic trees derived from nucleotide sequences could be divided into two main clusters. Cluster I comprised sequences from American strains mainly while cluster II contained the sequences of the strains originating from Africa and Asia chiefly. Both genetic regions of the strains investigated in the present study coincidently showed a significant sequence divergence among Arthrospira strains from East Africa, India and Mexico indicating possible distinct evolutionary lineages.
L3 - 10.2216/09-71.1
JF - Phycologia
VL - 49
IS - 4
SP - 361
EP - 372
ER -
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