@ARTICLE{TreeBASE2Ref21561,
author = {Shinya Sato},
title = {Morphology and life history of Amphora commutata (Bacillariophyta) I: The vegetative cell and phylogenetic position},
year = {2013},
keywords = {Amphora, Diatom, Diplamphora, Feulgen staining, Girdle structure, Halamphora, Ontogeny, Oxyamphora, Phylogeny, SSU rDNA},
doi = {},
url = {http://},
pmid = {},
journal = {Phycologia},
volume = {52},
number = {2},
pages = {},
abstract = {Amphoroid diatoms are recognized in the light microscope by their strongly dorsiventral frustules; their raphe system lies close to the ventral margin of the valve, and their girdle is much wider on the dorsal side. Historically, these diatoms were classified into the genus Amphora, although heterogeneity was pointed out based mainly on frustule fine structure, chloroplast arrangement, and molecular phylogeny. In this study detailed observations were undertaken on the frustule of an amphoroid species Amphora commutata. Distinct features of this species were the hyaline ventral side of the valve and hitherto unknown apical pores. The ontogeny of the valve and girdle bands was also reported. A molecular phylogenetic analysis of Amphora species, including representatives of the subgenera Amphora, Oxyamphora and Diplamphora, was performed, based on nuclear encoded SSU rDNA. The best tree showed paraphyly of amphoroid diatoms and also suggested that the subgenus Diplamphora, which includes A. commutata and was characterized by the structured, porous girdle bands, may be paraphyletic with respect to the monophyletic subgenus Amphora, which has mostly plain girdle bands; however, hypothesis testing with constrained topologies did not reject the monophyly of either group.}
}
Taxa for Study 13483
Citation title:
"Morphology and life history of Amphora commutata (Bacillariophyta) I: The vegetative cell and phylogenetic position".
Study name:
"Morphology and life history of Amphora commutata (Bacillariophyta) I: The vegetative cell and phylogenetic position".
This study is part of submission 13483
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
971632 |
Amphiprora paludosa var. hyalina FR865482 |
|
|
971583 |
Amphora arcus S0822 AB754834 |
|
430834
|
971613 |
Amphora cf. capitellata AJ535158 |
|
|
971643 |
Amphora cf. fogediana AM502022 |
|
|
971588 |
Amphora cf. proteus AJ535147 |
|
|
971627 |
Amphora coffeaeformis FR865481 |
265554
|
3869591
|
971612 |
Amphora coffeaeformis HM805019 |
265554
|
3869591
|
971596 |
Amphora coffeaeformis HQ912602 |
265554
|
3869591
|
971625 |
Amphora commutata S0876 AB754836 |
|
2637981
|
971637 |
Amphora copulata S0992 AB754831 |
|
3926466
|
971603 |
Amphora graeffeana S0824 AB754835 |
|
3312324
|
971616 |
Amphora libyca AM501959 |
431329
|
3881084
|
971585 |
Amphora marina S0907 AB754837 |
|
3312335
|
971631 |
Amphora montana AJ243061 |
97221
|
2637598
|
971633 |
Amphora normanii AM501958 |
431327
|
3869177
|
971626 |
Amphora pediculus AM501960 |
431328
|
3926164
|
971601 |
Amphora pediculus HQ912417 |
431328
|
3926164
|
971582 |
Amphora sp. AT.221.04 AM501957 |
|
|
971597 |
Amphora sp. MBIC10098 AB183590 |
|
|
971598 |
Amphora sp. s0915 AB754838 |
|
|
971592 |
Amphora sp. s0916 AB754830 |
|
|
971611 |
Bacillariophyta sp. A2 FR744763 |
|
|
971638 |
Bacillariophyta sp. MBIC10806 AB183641 |
|
|
971606 |
Bacillariophyta sp. MBIC10809 AB183642 |
|
|
971602 |
Bacillariophyta sp. MBIC10814 AB183644 |
|
|
971630 |
Bacillariophyta sp. MBIC10815 AB183645 |
|
|
971614 |
Bacillariophyta sp. MBIC10819 AB183647 |
|
|
971604 |
Caloneis lewisii HQ912580 |
|
3869083
|
971619 |
Campylodiscus clypeus HQ912412 |
|
3869417
|
971609 |
Craticula cuspidata HQ912581 |
431343
|
3869567
|
971594 |
Cymatopleura elliptica HQ912659 |
303462
|
3868783
|
971599 |
Entomoneis cf. alata AJ535160 |
|
|
971587 |
Entomoneis ornata HQ912411 |
|
3869162
|
971610 |
Entomoneis punctulata HM805031 |
|
3314236
|
971586 |
Entomoneis sp. CCMP1693 EF585586 |
186043
|
10203439
|
971618 |
Entomoneis sp. CS782 HQ912631 |
186043
|
10203439
|
971590 |
Epithemia argus HQ912408 |
|
3869276
|
971593 |
Epithemia sorex AB546734 |
|
3869281
|
971620 |
Epithemia turgida AB546735 |
|
3869282
|
971634 |
Epithemia turgida AB546736 |
|
3869282
|
971600 |
Epithemia turgida HQ912410 |
|
3869282
|
971629 |
Fallacia monoculata HQ912596 |
|
3869639
|
971608 |
Fallacia pygmaea HQ912605 |
|
3869655
|
971584 |
Halamphora cf. fluminensis s0314 AB754832 |
|
|
971644 |
Halamphora sp. s0028 AB754833 |
|
|
971635 |
Pinnularia brebissonii HQ912604 |
445249
|
9761971
|
971605 |
Pinnularia termitina HQ912601 |
445254
|
3869129
|
971628 |
Rhopalodia contorta HQ912406 |
|
431056
|
971617 |
Rhopalodia gibba AB546737 |
245179
|
3869288
|
971622 |
Rhopalodia gibba AB546738 |
245179
|
3869288
|
971595 |
Rhopalodia gibba HQ912407 |
245179
|
3869288
|
971589 |
Rhopalodia sp. 9vi08.1F.2 HQ912405 |
|
|
971639 |
Stauroneis acuta HQ912579 |
|
3869030
|
971615 |
Stauroneis kriegeri AM501990 |
431587
|
2637505
|
971640 |
Stenopterobia curvula HQ912416 |
|
3311139
|
971623 |
Surirella fastuosa var. cuneata AJ535161 |
|
|
971642 |
Surirella minuta HQ912658 |
|
|
971621 |
Surirella sp. CCAP 1071.2 FR865515 |
|
|
971636 |
Surirella sp. DA1 HQ912414 |
|
|
971624 |
uncultured marine eukaryote DQ310276 |
|
|
971591 |
uncultured marine picoeukaryote FR874816 |
|
|
971641 |
uncultured marine picoeukaryote FR874818 |
|
|
971607 |
uncultured stramenopile FN690583 |
152704
|
10189410
|