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This study is part of submission (Status: ).
Analyses
Analysis 1
Analysis details
Name
Input data
1 Input object(s)
Kinosternidae nuclear DNA matrix
Analysis step
bayesian analysis --
Step details
Name
Software used
Name
Version
Algorithm
--- Please Select ---
maximum likelihood
parsimony
bayesian inference
minimum evolution
neighbor joining
UPGMA
other algorithm
Commands
begin mrbayes; outgroup 1; charset AHR=1-665; charset AIING=666-1411; charset BDNF=1412-2097; charset BMP2=2098-2729; charset HMGB2=2730-3308; charset HNFL=3309-4043; charset NB22519=4044-4791; charset P26s4=4792-5550; charset PAX=5551-6322; charset R35=6323-7377; charset RAG=7378-8188; charset TB01=8189-8832; charset TB29=8833-9401; charset ZFHX1B=9402-10305; partition genes=14:AHR,AIING,BDNF,BMP2,HMGB2,HNFL,NB22519,P26s4,PAX,R35,RAG,TB01,TB29,ZFHX1B; set partition=genes; lset applyto=(all) nst=2 rates=invgamma; unlink shape=(all) pinvar=(all) statefreq=(all) revmat=(all); prset applyto=(all) ratepr=variable; prset brlenspr=unconstrained:exponential(200); mcmc ngen=10000000 printfreq=1000 samplefreq=1000 nruns=2 nchains=4 savebrlens=yes file=Kino1part; sumt burnin=2501 conformat=simple; end;
Output data
1 Output object(s)
con 50 majrule
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This study is part of submission
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