Analyses for Study

Analyses

Analysis 1

Analysis details

Name

Input data 1 Input object(s) Goniolimon ITS Matrix

Analysis step Phylogenetic tree resulting from Bayesian analyses of the ITS sequences -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands begin mrbayes; charset 1stpos = 1-620\3; charset 2ndpos = 2-620\3; charset 3rdpos = 3-620\3; partition bycodon = 3:1stpos,2ndpos,3rdpos; lset nst=6 rates=invgamma; mcmc ngen=2000000 printfreq=500 samplefreq=100 nchains=4 savebrlens=yes; end;lset nst=6 rates=invgamma mcmc ngen=2000000 samplefreq=100 nchains=4

Output data 1 Output object(s) Fig. 2a

Analysis 2

Analysis details

Name

Input data 1 Input object(s) Goniolimon cpDNA Matrix

Analysis step Phylogenetic tree resulting from Bayesian analyses of the combined cpDNA sequences (trnH-psbA + trnQ-rps16) -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands begin mrbayes; charset 1stpos = 1-583\3; charset 2ndpos = 2-583\3; charset 3rdpos = 3-583\3; partition bycodon = 3:1stpos,2ndpos,3rdpos; lset nst=6 rates=propinv; mcmc ngen=2000000 printfreq=500 samplefreq=100 nchains=4 savebrlens=yes; end;

Output data 1 Output object(s) Fig. 2b