TreeBASE Search-Analyses for study 21584

Delicious

Analyses for Study 21584

Citation title: "Reciprocal monophyly despite the short evolutionary history of moose (Alces alces) revealed by mitogenome analysis".

Study name: "Reciprocal monophyly despite the short evolutionary history of moose (Alces alces) revealed by mitogenome analysis".

This study is part of submission 21584 (Status: Published).

Analysis details

Name
Notes

Input data

Analysis step

Step details

Name

Software used

Name
Algorithm
Commands
A. Partitions and substitution models: 1. first codon position of ND1, ND2, ND3, ND4L, ND4, ND5 - GTR+I+G+X 2. second codon position of ND1, ND2, ND3, ND4L, ND4, ND5 - GTR+I+G 3. third codon position of ND1, ND2, ND3, ND4L, ND4, ND5 - TN93+I+G+X 4. first codon position of COX1, COX2, COX3 - TN93+I+G+equal base frequencies 5. second codon position of COX1, COX2, COX3 - HKY+I+G 6. third codon position of COX1, COX2, COX3 - TN93+I+G+X 7. first codon position of ATP8, ATP6 - HKY+G+X 8. second codon position of ATP8, ATP6 - GTR+I+G+X 9. third codon position of ATP8, ATP6 - GTR+I+G+X 10. first codon position of CYTB - GTR+I+G+X 11. second codon position of CYTB - TN93+I+G+X 12. third codon position of CYTB - GTR+I+G+X 13. fist codon position of ND6 - GTR+I+G+X 14. second codon position of ND6 - HKY+I+X 15. 1third codon position of ND6 - HKY+G+X B. Uncorrelated relaxed clock with lognormal distribution C. Tree prior - Speciation: Yule Process D. Node calibration: 1. TMRCA of Cervinae subfamily (9+-1 mya) 2. TMRCA of genus Capreolus (0.81+-0.3 mya) E. MCMC chain: 20 000 000 sampled every 5 000 steps

Output data