TreeBASE Search-Analyses for study 24414

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Analyses for Study 24414

Citation title: "First complete plastid genome sequence of Plantago ovata and its comparative analysis: Expanded inverted repeat (IR) region with large scale inversion".

Study name: "First complete plastid genome sequence of Plantago ovata and its comparative analysis: Expanded inverted repeat (IR) region with large scale inversion".

This study is part of submission 24414 (Status: Published).

Analyses

Analysis 1

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1 Input object(s)

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ML analysis --

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The evolutionary history was inferred by using the Maximum Likelihood method based on the Kimura 2-parameter model [1]. The tree with the highest log likelihood (-712992.7509) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach. The analysis involved 35 nucleotide sequences. All positions with less than 95% site coverage were eliminated. That is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position. There were a total of 119306 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 [2].

Output data

Analyses for Study 24414

Analyses

Analysis 1

1 Input object(s)

ML analysis --

1 Output object(s)