TreeBASE Search-Matrices for study 18012

@ARTICLE{TreeBASE2Ref24891, author = {Lukasz Banasiak and Aneta Wojewodzka and Jakub Baczynski and Jean-Pierre Reduron and Marcin Piwczynski and Renata Kurzyna-Mlynik and Rafal Gutaker and Agnieszka Czarnocka-Cieciura and Sylwia Kosmala-Grzechnik and Krzysztof Spalik}, title = {Phylogeny of Apiaceae subtribe Daucinae and the taxonomic delineation of its genera}, year = {2016}, keywords = {cpDNA; Daucus; Laserpitieae; Laserpitium; nrDNA ITS; Scandiceae; taxonomy}, doi = {10.12705/653.8}, url = {http://}, pmid = {}, journal = {Taxon}, volume = {65}, number = {3}, pages = {563--585}, abstract = {Scandiceae subtribe Daucinae encompasses umbellifers that have fruits with prominent secondary ridges projecting into wings (former tribe Laserpitieae) or spines (former tribe Caucalideae pro parte). It comprises several economically or medicinally important genera including Cuminum, Daucus, Laser, Laserpitium and Thapsia among others. Recent molecular studies, based mostly on nrDNA ITS sequences, revealed that neither Daucus nor Laserpitium are monophyletic. To address issues of relationships and apply respective nomenclatural changes, we obtained additional ITS sequences as well as independent data from three plastid markers?rps16 intron, rpoC1 intron and rpoB-trnC intergenic spacer?for a comprehensive sample of the subtribe. We examined data for 260 accessions representing all genera of Daucinae and 81 of its ca. 93 species. Phylogenetic trees were estimated using maximum likelihood and Bayesian inference methods. The results indicate that former Laserpitieae constitute a paraphyletic grade at the base of the spiny-fruited members of Daucinae while traditionally delimited Daucus and Laserpitium are polyphyletic. To maintain a monophyletic Daucus, we suggest including the following genera and species into its synonymy: Agrocharis, Melanoselinum, Monizia, Pachyctenium, Pseudorlaya, Rouya, Tornabenea, Athamanta dellacellae and Cryptotaenia elegans. The species of Laserpitium occur in seven clades and only six species of the Laserpitium s.str. clade retain the generic name. Several species are transferred to Ekimia, Laser and Thapsia; additionally, a monospecific genus Siler is restored and a new genus, Silphiodaucus, is established. The inclusion of Ammodaucus into Thapsia suggested in an earlier study is not supported. The position of Laserpitium pseudomeum requires further study.} }

Delicious

Connotea

Matrices for Study 18012

Citation title: "Phylogeny of Apiaceae subtribe Daucinae and the taxonomic delineation of its genera".

Study name: "Phylogeny of Apiaceae subtribe Daucinae and the taxonomic delineation of its genera".

This study is part of submission 18012 (Status: Published).

Matrices

ID	Matrix Title	Description	Data type	NTAX	NCHAR	Taxa
M35311	Apiaceae subtribe Daucinae ITS short	Internal Transcribed Spacer, reduced taxon sampling, matrix for computations	Nucleic Acid	98	600	View Taxa
M35309	Apiaceae subtribe Daucinae cpDNA	Plastid DNA, matrix for computations	Nucleic Acid	106	3134	View Taxa
M35314	Apiaceae subtribe Daucinae rpoB RAW	rpoB-trnC intergenic spacer, original matrix	Nucleic Acid	35	1643	View Taxa
M35316	Apiaceae subtribe Daucinae rps16 RAW	rps16 intron, original matrix	Nucleic Acid	98	984	View Taxa
M35317	Apiaceae subtribe Daucinae All	All markers combined (ITS + cpDNA), matrix for computations	Nucleic Acid	241	3734	View Taxa
M35315	Apiaceae subtribe Daucinae rpoC1 RAW	rpoC1 intron, original matrix	Nucleic Acid	75	1139	View Taxa
M35312	Apiaceae subtribe Daucinae ITS	Internal Transcribed Spacer, matrix for computations	Nucleic Acid	212	600	View Taxa
M35313	Apiaceae subtribe Daucinae no rpoB-trnC	rpoB-trnC intergenic spacer removed from the analyses	Nucleic Acid	109	2483	View Taxa
M35310	Apiaceae subtribe Daucinae ITS RAW	Internal Transcribed Spacer, original matrix	Nucleic Acid	260	649	View Taxa