@ARTICLE{TreeBASE2Ref27207,
author = {Thomas Jung and Marilia Horta Jung and Santa Olga Cacciola and Thomas Cech and Jozsef Bakonyi and Diana Seress and Saveria Mosca and Leonardo Schena and Salvatore seddaiu and Antonella Pane and Magnano di San Lio Gaetano and Cristiana Maia and Alfredo Cravador and Antonio Franceschini and Bruno Scanu},
title = {Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal},
year = {2017},
keywords = {Clade 7, cryptic species, evolution, homothallic, phylogeny, Phytophthora quercina, species radiation},
doi = {10.5598/imafungus.2017.08.02.02},
url = {http://www.ingentaconnect.com/content/ima/imafung/pre-prints/content-n2_vol8_no2_article2},
pmid = {},
journal = {IMA Fungus},
volume = {8},
number = {2},
pages = {219--244},
abstract = {During surveys of Phytophthora diversity in natural and semi-natural Fagaceae forests in Austria, Italy and Portugal, four new cryptic species were isolated from rhizosphere soil samples. Multigene phylogeny based on nuclear ITS, ?-tubulin and HSP90 and mitochondrial cox1 and NADH1 gene sequences demonstrated that two species, P. tyrrhenica and P. vulcanica spp. nov., belong to phylogenetic Clade 7a, while the other two species, P. castanetorum and P. tubulina spp. nov., clustered together with P. quercina forming a new clade, named here as Clade 12. All four new species are homothallic and have low optimum and maximum temperatures for growth and very slow growth rates at their respective optimum temperature. They differed from each other and from related species by a unique combination of morphological characters, cardinal temperatures, and growth rates. Pathogenicity of all Phytophthora species to the root system of their respective host species was demonstrated in soil infestation trials.}
}
Matrices for Study 20982

Citation title:
"Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal".

Study name:
"Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal".

This study is part of submission 20982
(Status: Published).
Matrices
| ID |
Matrix Title |
Description |
Data type |
NTAX |
NCHAR |
Taxa |
|
|
|
|
|
M41094
|
Phytophthora NADH1 alignment vulcanica tyrrhenica_MG_all |
|
Nucleic Acid |
43 |
797 |
View Taxa
|
|
|
|
|
|
M41178
|
Phytophthora Align CoxI cast_tub_without_short_seqs |
|
Nucleic Acid |
117 |
867 |
View Taxa
|
|
|
|
|
|
M41158
|
Phytophthora BTub alignment vulcanica tyrrhenica |
|
Nucleic Acid |
47 |
911 |
View Taxa
|
|
|
|
|
|
M41182
|
Phytophthora Align HSP90-MG nuc_v2_cast_tub |
|
Nucleic Acid |
117 |
843 |
View Taxa
|
|
|
|
|
|
M41179
|
Phytophthora Align NADH1 cast_tub |
|
Nucleic Acid |
117 |
796 |
View Taxa
|
|
|
|
|
|
M41180
|
Phytophthora Align ITS-MG nuc_v2_cast_tub |
|
Nucleic Acid |
117 |
1010 |
View Taxa
|
|
|
|
|
|
M41091
|
Phytophthora BTub alignment vulcanica tyrrhenica_MG_all |
|
Nucleic Acid |
43 |
911 |
View Taxa
|
|
|
|
|
|
M41159
|
Phytophthora HSP90 alignment vulcanica tyrrhenica |
|
Nucleic Acid |
47 |
840 |
View Taxa
|
|
|
|
|
|
M41177
|
Phytophthora Align HSP90 cast_tub |
|
Nucleic Acid |
117 |
846 |
View Taxa
|
|
|
|
|
|
M41186
|
Phytophthora Align NADH1-MG cast_tub |
|
Nucleic Acid |
117 |
789 |
View Taxa
|
|
|
|
|
|
M41092
|
Phytophthora HSP90 alignment vulcanica tyrrhenica_MG_all |
|
Nucleic Acid |
43 |
840 |
View Taxa
|
|
|
|
|
|
M41181
|
Phytophthora Align Btub-MG nuc_v2_cast_tub |
|
Nucleic Acid |
117 |
915 |
View Taxa
|
|
|
|
|
|
M41161
|
Phytophthora NADH1 alignment vulcanica tyrrhenica |
|
Nucleic Acid |
47 |
797 |
View Taxa
|
|
|
|
|
|
M41185
|
Phytophthora Align HSP90-MG cast_tub |
|
Nucleic Acid |
117 |
843 |
View Taxa
|
|
|
|
|
|
M41093
|
Phytophthora CoxI alignment vulcanica tyrrhenica_MG_all |
|
Nucleic Acid |
43 |
867 |
View Taxa
|
|
|
|
|
|
M41175
|
Phytophthora Align ITS cast_tub |
|
Nucleic Acid |
117 |
1016 |
View Taxa
|
|
|
|
|
|
M41184
|
Phytophthora Align Btub-MG cast_tub |
|
Nucleic Acid |
117 |
915 |
View Taxa
|
|
|
|
|
|
M41183
|
Phytophthora Align ITS-MG cast_tub |
|
Nucleic Acid |
117 |
992 |
View Taxa
|
|
|
|
|
|
M41160
|
Phytophthora CoxI alignment vulcanica tyrrhenica |
|
Nucleic Acid |
47 |
867 |
View Taxa
|
|
|
|
|
|
M41090
|
Phytophthora ITS alignment vulcanica tyrrhenica_MG_all |
|
Nucleic Acid |
43 |
842 |
View Taxa
|
|
|
|
|
|
M41157
|
Phytophthora ITS alignment vulcanica tyrrhenica |
|
Nucleic Acid |
47 |
842 |
View Taxa
|
|
|
|
|
|
M41176
|
Phytophthora Align Btub cast_tub |
|
Nucleic Acid |
117 |
918 |
View Taxa
|
|
|
|
|