TreeBASE Search-Matrices for study 26404

@ARTICLE{TreeBASE2Ref30904, author = {Wu Zhang and Johannes (Ewald) Zacharias Groenewald and Lorenzo Lombard and Rene K. Schumacher and Bernard Slippers and Jolanda Roux and Michael J Wingfield and Pedro W. Crous}, title = {Additions to Botryosphaeriales}, year = {2020}, keywords = {canker pathogens, Multi-Locus Sequence Typing (MLST), new taxa, systematics.}, doi = {}, url = {http://}, pmid = {}, journal = {Persoonia}, volume = {}, number = {}, pages = {}, abstract = {The order Botryosphaeriales (Dothideomycetes) includes numerous endotrophic, saprotrophic, and plant pathogenic species commonly associated with leaf spots, fruit and root rots, die-back or cankers of diverse woody hosts. In a recent phylogenetic treatment of 499 isolates in the CBS culture collection, we evaluated the families and genera that occur in the order. This study represents the second part of this project, and presents multigene phylogenetic analyses for a further 895 isolates, using ITS, tef1, tub2, LSU, and rpb2 loci, in combination with morphological data. Based on these data a total of 24 species are newly described, namely Botryosphaeria diospyri (Diospyros, South Africa), B. grevilleae (Grevillea, Australia), Diplodia afrocarpi (Afrocarpus, South Africa), D. hexachlamydis (Hexachlamis, Uruguay), D. pinicola (Pinus, South Africa), Dothiorella diospyri (Diospyros, South Africa), Do. vitigena (Vitis, USA), Do. vitina (Vitis, Spain), Do. vitiphila (Vitis, South Africa), Lasiodiplodia acaciae (Acacia, Indonesia), L. terminaliae (Terminalia, Tanzania), L. syzygii (Syzygium, South Africa), Neofusicoccum aloes (Aloe, South Africa), N. eucalyptigena (Eucalyptus, Venezuela), N. perseae (Persea, USA), N. podocarpi (Podocarpus, South Africa), N. rapaneae (Rapanea, South Africa), N. theobromae (Theobroma, Panama), Neoscytalidium sanguinicola (human, Netherlands), Ne. gabonense (human, Gabon), Pseudofusicoccum perseae (Persea, USA), Saccharata grevilleae (Grevillea, Australia) and S. hakearum (Hakea, Australia) and One new combination is introduced as Phaeobotryon hypodermia. This study produced an expanded phylogenetic backbone for Botryosphaeriales, and clarified the identity of numerous isolates that lacked Latin binomials, or were deposited under incorrect names in the past, adding valuable information to our knowledge of species in the order.} }

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Matrices for Study 26404

Citation title: "Additions to Botryosphaeriales".

Study name: "Additions to Botryosphaeriales".

This study is part of submission 26404 (Status: Published).

Matrices

ID	Matrix Title	Description	Data type	NTAX	NCHAR	Taxa
M54745	Diplodia Phylogeny	combined ITS, tef1 and tub2 sequence alignment	Nucleic Acid	180	1291	View Taxa
M54751	Neofusicoccum parvum species complex Phylogeny	combined ITS, tef1, tub2 and Rpb2 sequence alignment	Nucleic Acid	75	1805	View Taxa
M54744	Botryosphaeria Phylogeny	combined ITS, tef1 and tub2 sequence alignment	Nucleic Acid	51	1206	View Taxa
M54754	Pseudofusicoccum Phylogeny	combined ITS, LSU, tef1 sequence alignment	Nucleic Acid	30	1256	View Taxa
M54753	Phaeobotryon, Alanphillipsia, Barriopsis, Oblongocollomyce, and Sphaeropsis Phylogeny	combined ITS, LSU and tef1 sequence alignment	Nucleic Acid	54	1726	View Taxa
M54752	Neoscytalidium Phylogeny	combined ITS, tef1, tub2 sequence alignment	Nucleic Acid	66	1133	View Taxa
M54749	Lasiodiplodia Phylogeny	combined ITS, tef1, tub2 and Rpb2 sequence alignment	Nucleic Acid	143	1610	View Taxa
M54755	Saccharata Phylogeny	combined ITS, tef1 and Rpb2 sequence alignment	Nucleic Acid	41	1529	View Taxa
M54750	Neofusicoccum Phylogeny	combined ITS, tef1, tub2 and Rpb2 sequence alignment	Nucleic Acid	208	1840	View Taxa
M54748	Dothorella Phylogeny	combined ITS, tef1 and tub sequence alignment	Nucleic Acid	123	1272	View Taxa