@ARTICLE{TreeBASE2Ref18056,
author = {S. I. Warwick and Connie A Sauder},
title = {Phylogeny of tribe Brassiceae (Brassicaceae) based on chloroplast restriction site polymorphisms and nuclear ribosomal internal transcribed spacer (ITS) and chloroplast trnL intron sequences},
year = {2005},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Canadian Journal of Botany},
volume = {},
number = {},
pages = {},
abstract = {Using sequence data from the ITS region (internal transcribed spacers ITS-1 and ITS-2 of nuclear DNA and the 5.8 rRNA gene), chloroplast DNA (cpDNA) sequence data from the trnL intron and cpDNA restriction site polymorphism data, we examined the evolutionary relationships of the tribe Brassiceae (Brassicaceae). A group of approximately 50 genera, it is distinguished by the presence of conduplicate cotyledons and/or heteroarthrocarpic fruit. cpDNA restriction site data and ITS, trnL, and combined ITS/trnL sequence data were obtained for 22, 104, 94, and 87 taxa in the tribe, respectively. Results from maximum parsimony analyses of the cpDNA and ITS and ITS/trnL sequence data showed a monophyletic origin for the tribe, with the inclusion of controversial members Calepina, Conringia and Orychophragmus. ITS- and ITS/trnL-based clades corresponded to taxonomic subtribes: Vellinae, Zillinae, and Savignyinae; but as with previous cpDNA studies, there was little support for subtribes Brassicinae, Raphaninae and Moricandiinae. Although there was no support for the Rapa/Oleracea or Nigra cpDNA lineages, many cpDNA subclades within each of them were evident in the ITS- and ITS/trnL-based phylogeny. The trnL sequence data provided little or no resolution of tribal or subtribal limits. The ITS-based data indicated polyphyletic origins for Brassica, Diplotaxis and Erucastrum.}
}
Matrix 17181 of Study 1347

Citation title:
"Phylogeny of tribe Brassiceae (Brassicaceae) based on chloroplast restriction site polymorphisms and nuclear ribosomal internal transcribed spacer (ITS) and chloroplast trnL intron sequences".

This study was previously identified under the legacy study ID S1274
(Status: Published).
Matrices
Title: ITS TEF BT combined
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Diaporthe arengae CBS114979 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe australafricana CBS111886 |
(none)
|
ATTGTTGGAACGCGCTCC-----GGCGCAC |
Diaporthe beckhausii CBS138_27 |
(none)
|
ATTGTTGGAACGCGCTCC-----GGCGCA- |
Diaporthe beilharziae BRIP54792 |
(none)
|
ATTGCTGGAACGCGCCTC-----GGCGCA- |
Diaporthe cynaroidis CBS122676 |
(none)
|
ATTGTTGGAACGCGCTCC-----GGCGCAC |
Diaporthe eugeniae CBS444_82 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe fraxini-augustifoliae BRIP54781 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe ganjae CBS180_91 |
(none)
|
ATTGCTGGAACGCGCCCC-----GGCGCA- |
Diaporthe infecunda CBS133812 |
(none)
|
ATTGCTGGAACGCGCTTC-----GGCGCA- |
Diaporthe litchicola BRIP54900 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe manihotia CBS505_76 |
(none)
|
ATTGCTGGAACGCGCTTC-----GGCGCA- |
Diaporthe musigena CPC17025 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe nothofagi BRIP54801 |
(none)
|
ATTGTTGGAACGCGCTCC-----GGCGCA- |
Diaporthe oncostoma CBS589_78 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe pascoei BRIP54847 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe perseae CBS151_73 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe pseudomangiferae CBS101339 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe pustulata CBS109742 |
(none)
|
ATTGCTGGAACGCGCCCC-----GGCGCA- |
Diaporthe salicicola BRIP54825 |
(none)
|
ATTGTTGGAACGCGCTCC-----GGCGCAC |
Diaporthe schini CBS133181 |
(none)
|
ATTGCTGGAACGCGCTTC-----GGCGCA- |
Diaporthe sp 6 CBS115584 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe tecomae CBS100547 |
(none)
|
ATTGCTGGAACGCGCCTC-----GGCGCA- |
Diaporthe toxica CBS534_93 |
(none)
|
ATTGCTGGAACGCGCCCCA----GGCGCA- |
Diaporthe viticola CBS113201 |
(none)
|
ATTGTTGGAACGCGCTTC-----GGCGCAC |
Diaporthella corylina CBS121124 |
(none)
|
ATTGCTGGAAAGCGCCGTAAAACAGCGCGC |
Columns
None of the columns has a description.