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Citation for Study 10246

Citation title: "Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics.".

This study was previously identified under the legacy study ID S2603 (Status: Published).

Citation

Bartosova P., Fiala I., & Hypsa V. 2009. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Molecular Phylogenetics and Evolution, 53(1): 81-93.

Authors

Bartosova P.
Fiala I.
Hypsa V.

Abstract

Views on myxosporean phylogeny and systematics have recently undergone substantial changes resulting from analyses of SSU rDNA. Here, we further investigate the evolutionary trends within myxosporean lineages by using 35 new sequences of the LSU rDNA. We show a good agreement between the two rRNA genes and confirm the main phylogenetic split between the freshwater and marine lineages. The informative superiority of the LSU data is shown by an increase of the resolution, nodal supports and tree indexes in the LSU rDNA and combined analyses. We determine the most suitable part of LSU for the myxosporean phylogeny by comparing informative content in various regions of the LSU sequences. Based on this comparison, we propose the D5?30-end part of the LSU rRNA gene as the most informative region which provides in concatenation with the complete SSU a well resolved and robust tree. To allow for simple amplification of the marker, we design specific primer set for this part of LSU rDNA.

Keywords

Myxosporea; Phylogeny; LBA; LSU rDNA; 28S; SSU rDNA; 18S; D domains

External links

DOI: 10.1016/j.ympev.2009.05.018
PMID: 19477283

About this resource

Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10246
Other versions: Nexus NeXML

Show BibTeX reference

		@ARTICLE{TreeBASE2Ref18736,
	 author = {Pavla  Bartosova and Ivan  Fiala and Vaclav  Hypsa},
	 title = {Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics.},
	 year = {2009},
	 keywords = {Myxosporea; Phylogeny; LBA; LSU rDNA; 28S; SSU rDNA; 18S; D domains},
	 doi = {10.1016/j.ympev.2009.05.018},
	 url = {},
	 pmid = {19477283},
	 journal = {Molecular Phylogenetics and Evolution},
	 volume = {53},
	 number = {1},
	 pages = {81--93},
	 abstract = {Views on myxosporean phylogeny and systematics have recently undergone substantial changes resulting from analyses of SSU rDNA. Here, we further investigate the evolutionary trends within myxosporean lineages by using 35 new sequences of the LSU rDNA. We show a good agreement between the two rRNA genes and confirm the main phylogenetic split between the freshwater and marine lineages. The informative superiority of the LSU data is shown by an increase of the resolution, nodal supports and tree indexes in the LSU rDNA and combined analyses. We determine the most suitable part of LSU for the myxosporean phylogeny by comparing informative content in various regions of the LSU sequences. Based on this comparison, we propose the D5?30-end part of the LSU rRNA gene as the most informative region which provides in concatenation with the complete SSU a well resolved and robust tree. To allow for simple amplification of the marker, we design specific primer set for this part of LSU rDNA.}
}

Show RIS reference

		TY  - JOUR
ID  - 18736
AU  - Bartosova,Pavla 
AU  - Fiala,Ivan 
AU  - Hypsa,Vaclav 
T1  - Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics.
PY  - 2009
KW  - Myxosporea; Phylogeny; LBA; LSU rDNA; 28S; SSU rDNA; 18S; D domains
UR  - 
N2  - Views on myxosporean phylogeny and systematics have recently undergone substantial changes resulting from analyses of SSU rDNA. Here, we further investigate the evolutionary trends within myxosporean lineages by using 35 new sequences of the LSU rDNA. We show a good agreement between the two rRNA genes and confirm the main phylogenetic split between the freshwater and marine lineages. The informative superiority of the LSU data is shown by an increase of the resolution, nodal supports and tree indexes in the LSU rDNA and combined analyses. We determine the most suitable part of LSU for the myxosporean phylogeny by comparing informative content in various regions of the LSU sequences. Based on this comparison, we propose the D5?30-end part of the LSU rRNA gene as the most informative region which provides in concatenation with the complete SSU a well resolved and robust tree. To allow for simple amplification of the marker, we design specific primer set for this part of LSU rDNA.
L3  - 10.1016/j.ympev.2009.05.018
JF  - Molecular Phylogenetics and Evolution
VL  - 53
IS  - 1
SP  - 81
EP  - 93
ER  -