@ARTICLE{TreeBASE2Ref19409,
author = {Frank T. Farruggia and Jamie H. Howard},
title = {Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae)},
year = {2011},
keywords = {Hologalegina, legumes, low copy nuclear gene, matK, PGDH, TRPT.},
doi = {},
url = {http://},
pmid = {},
journal = {Brittonia},
volume = {},
number = {},
pages = {},
abstract = {Most legume phylogenies have relied heavily on plastid gene datasets, with or without nuclear ribosomal DNA ITS data, but the sequences of nuclear genes and gene-spanning regions offer certain advantages. We tested the phylogenetic utility of five nuclear loci across the species-rich legume clade Hologalegina: PGDH, TRPT, HRIP, RNAR, and CNGC4 (CNGC4-like protein). Our objective was to determine whether any of these nuclear loci could be beneficial at resolving lower-level phylogenetic relationships in this clade, with a particular interest in finding markers that might work at the species level. While the phylogenetic utility of these nuclear loci is unknown outside of Hologalegina, we determined that two of the loci, PGDH and TRPT, are useful for phylogenetic analyses within Hologalegina, depending upon the desired scale of resolution. }
}
Citation for Study 11118
Citation title:
"Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae)".
Study name:
"Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae)".
This study is part of submission 11108
(Status: Published).
Citation
Farruggia F.T., & Howard J.H. 2011. Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae). Brittonia, .
Authors
-
Farruggia F.T.
(submitter)
480-332-2549
-
Howard J.H.
Abstract
Most legume phylogenies have relied heavily on plastid gene datasets, with or without nuclear ribosomal DNA ITS data, but the sequences of nuclear genes and gene-spanning regions offer certain advantages. We tested the phylogenetic utility of five nuclear loci across the species-rich legume clade Hologalegina: PGDH, TRPT, HRIP, RNAR, and CNGC4 (CNGC4-like protein). Our objective was to determine whether any of these nuclear loci could be beneficial at resolving lower-level phylogenetic relationships in this clade, with a particular interest in finding markers that might work at the species level. While the phylogenetic utility of these nuclear loci is unknown outside of Hologalegina, we determined that two of the loci, PGDH and TRPT, are useful for phylogenetic analyses within Hologalegina, depending upon the desired scale of resolution.
Keywords
Hologalegina, legumes, low copy nuclear gene, matK, PGDH, TRPT.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S11118
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref19409,
author = {Frank T. Farruggia and Jamie H. Howard},
title = {Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae)},
year = {2011},
keywords = {Hologalegina, legumes, low copy nuclear gene, matK, PGDH, TRPT.},
doi = {},
url = {http://},
pmid = {},
journal = {Brittonia},
volume = {},
number = {},
pages = {},
abstract = {Most legume phylogenies have relied heavily on plastid gene datasets, with or without nuclear ribosomal DNA ITS data, but the sequences of nuclear genes and gene-spanning regions offer certain advantages. We tested the phylogenetic utility of five nuclear loci across the species-rich legume clade Hologalegina: PGDH, TRPT, HRIP, RNAR, and CNGC4 (CNGC4-like protein). Our objective was to determine whether any of these nuclear loci could be beneficial at resolving lower-level phylogenetic relationships in this clade, with a particular interest in finding markers that might work at the species level. While the phylogenetic utility of these nuclear loci is unknown outside of Hologalegina, we determined that two of the loci, PGDH and TRPT, are useful for phylogenetic analyses within Hologalegina, depending upon the desired scale of resolution. }
}
- Show RIS reference
TY - JOUR
ID - 19409
AU - Farruggia,Frank T.
AU - Howard,Jamie H.
T1 - Examination of five nuclear markers for phylogenetic study of Hologalegina (Leguminosae)
PY - 2011
KW - Hologalegina
KW - legumes
KW - low copy nuclear gene
KW - matK
KW - PGDH
KW - TRPT.
UR - http://dx.doi.org/
N2 - Most legume phylogenies have relied heavily on plastid gene datasets, with or without nuclear ribosomal DNA ITS data, but the sequences of nuclear genes and gene-spanning regions offer certain advantages. We tested the phylogenetic utility of five nuclear loci across the species-rich legume clade Hologalegina: PGDH, TRPT, HRIP, RNAR, and CNGC4 (CNGC4-like protein). Our objective was to determine whether any of these nuclear loci could be beneficial at resolving lower-level phylogenetic relationships in this clade, with a particular interest in finding markers that might work at the species level. While the phylogenetic utility of these nuclear loci is unknown outside of Hologalegina, we determined that two of the loci, PGDH and TRPT, are useful for phylogenetic analyses within Hologalegina, depending upon the desired scale of resolution.
L3 -
JF - Brittonia
VL -
IS -
ER -
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