TreeBASE Search-Citation for study 12564

Delicious

Connotea

Citation for Study 12564

Citation title: "Phylogenic analysis of additional Neurospora crassa isolates".

Study name: "Phylogenic analysis of additional Neurospora crassa isolates".

This study is part of submission 12564 (Status: Published).

Citation

Radic T., Gastaldello S., Diegmann J., & Roenneberg T. 2012. Phylogenic analysis of additional Neurospora crassa isolates. Fungal Genetics Reports, (59): 13 - 20.

Authors

Radic T. (submitter) +49 89 2180 75 645
Gastaldello S.
Diegmann J.
Roenneberg T.

Abstract

The ascomycete Neurospora crassa is classical model organisms in biology. So far, a phylogenetic analysis based on genomic sequences of four non-functional nuclear loci has been reported for 44 natural isolates of N. crassa. Three subgroups (clades) with a distinct geographical distribution have been identified: clade A (Caribbean Basin and Ivory Coast), clade B (Europe, Ivory Coast and India), and clade C (India). Here, we report the results of a phylogenetic analysis of 16 additional isolates. Six of these were from the Caribbean Basin, eight from Europe and one from Pakistan and one from Thailand. The previously described clades and their geographical distribution were generally confirmed. All Caribbean isolates belonged to clade A and all European isolates belonged to clade B, with the exception of one isolate from Italy, which also belonged to clade A, suggesting a transport from the Caribbean Basin or the Ivory Coast to Europe. Interestingly, the isolates from Pakistan and Thailand were found in a separate group, basal to all other clades. Their phylogenetic classification is not yet clear as they might belong to N. crassa but as well to N. perkinsii, potentially representing yet undescribed phylogenetic groups or species of Neurospora, or hybrids.

Keywords

ascomycetes, phylogenetic species, wild-types

External links

Other URL: http://www.fgsc.net/FGR/FGR59/FGR59Radic.htm

About this resource

Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12564
Other versions: Nexus NeXML

Show BibTeX reference

		@ARTICLE{TreeBASE2Ref20587,
	 author = {Tanja  Radic and Silvia  Gastaldello and Julia  Diegmann and Till  Roenneberg},
	 title = {Phylogenic analysis of additional Neurospora crassa isolates},
	 year = {2012},
	 keywords = {ascomycetes, phylogenetic species, wild-types},
	 doi = {},
	 url = {http://www.fgsc.net/FGR/FGR59/FGR59Radic.htm},
	 pmid = {},
	 journal = {Fungal Genetics Reports},
	 volume = {},
	 number = {59},
	 pages = {13 -- 20},
	 abstract = {The ascomycete Neurospora crassa is classical model organisms in biology. So far, a phylogenetic analysis based on genomic sequences of four non-functional nuclear loci has been reported for 44 natural isolates of N. crassa. Three subgroups (clades) with a distinct geographical distribution have been identified: clade A (Caribbean Basin and Ivory Coast), clade B (Europe, Ivory Coast and India), and clade C (India). Here, we report the results of a phylogenetic analysis of 16 additional isolates. Six of these were from the Caribbean Basin, eight from Europe and one from Pakistan and one from Thailand. The previously described clades and their geographical distribution were generally confirmed. All Caribbean isolates belonged to clade A and all European isolates belonged to clade B, with the exception of one isolate from Italy, which also belonged to clade A, suggesting a transport from the Caribbean Basin or the Ivory Coast to Europe. Interestingly, the isolates from Pakistan and Thailand were found in a separate group, basal to all other clades. Their phylogenetic classification is not yet clear as they might belong to N. crassa but as well to N. perkinsii, potentially representing yet undescribed phylogenetic groups or species of Neurospora, or hybrids.}
}

Show RIS reference

TY - JOUR
ID - 20587
AU - Radic,Tanja
AU - Gastaldello,Silvia
AU - Diegmann,Julia
AU - Roenneberg,Till
T1 - Phylogenic analysis of additional Neurospora crassa isolates
PY - 2012
KW - ascomycetes
KW - phylogenetic species
KW - wild-types
UR - http://www.fgsc.net/FGR/FGR59/FGR59Radic.htm
N2 - The ascomycete Neurospora crassa is classical model organisms in biology. So far, a phylogenetic analysis based on genomic sequences of four non-functional nuclear loci has been reported for 44 natural isolates of N. crassa. Three subgroups (clades) with a distinct geographical distribution have been identified: clade A (Caribbean Basin and Ivory Coast), clade B (Europe, Ivory Coast and India), and clade C (India). Here, we report the results of a phylogenetic analysis of 16 additional isolates. Six of these were from the Caribbean Basin, eight from Europe and one from Pakistan and one from Thailand. The previously described clades and their geographical distribution were generally confirmed. All Caribbean isolates belonged to clade A and all European isolates belonged to clade B, with the exception of one isolate from Italy, which also belonged to clade A, suggesting a transport from the Caribbean Basin or the Ivory Coast to Europe. Interestingly, the isolates from Pakistan and Thailand were found in a separate group, basal to all other clades. Their phylogenetic classification is not yet clear as they might belong to N. crassa but as well to N. perkinsii, potentially representing yet undescribed phylogenetic groups or species of Neurospora, or hybrids.
L3 -
JF - Fungal Genetics Reports
VL -
IS - 59
ER -