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Citation for Study 17059

Citation title: "Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus".

Study name: "Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus".

This study is part of submission 17059 (Status: Published).

Citation

Yoshikawa T., Shimojima M., Fukushi S., Tani H., Fukuma A., Taniguchi S., Singh H., Suda Y., Shirabe K., Toda S., Shimazu Y., Nomachi T., Gokuden M., Morimitsu T., Ando K., Yoshikawa A., Kan M., Uramoto M., Osako H., Kida K., Takimoto H., Kitamoto H., Terasoma F., Honda A., Maeda K., Takahashi T., Yamagishi T., Oishi K., Morikawa S., & Saijo M. 2015. Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus. The Journal of Infectious Diseases, .

Authors

• Yoshikawa T. (submitter) 0352851111
• Shimojima M.
• Fukushi S.
• Tani H.
• Fukuma A.
• Taniguchi S.
• Singh H.
• Suda Y.
• Shirabe K.
• Toda S.
• Shimazu Y.
• Nomachi T.
• Gokuden M.
• Morimitsu T.
• Ando K.
• Yoshikawa A.
• Kan M.
• Uramoto M.
• Osako H.
• Kida K.
• Takimoto H.
• Kitamoto H.
• Terasoma F.
• Honda A.
• Maeda K.
• Takahashi T.
• Yamagishi T.
• Oishi K.
• Morikawa S.
• Saijo M.

Abstract

Background. Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne acute infectious disease caused by the SFTS virus (SFTSV). SFTS has been reported in China, South Korea, and Japan as a novel Bunyavirus. Although several molecular epidemiology and phylogenetic studies have been performed, the information obtained was limited, since the analyses included no or only a small number of SFTSV strains from Japan. Methods. The nucleotide sequences of 75 SFTSV strains in Japan were newly determined directly from the patients' sera. In addition, the sequences of seven strains isolated in vitro were determined and compared with those in the patients' sera. More than 90 strains that were identified in China, one strain in South Korea, and 50 strains in Japan were phylogenetically analyzed. Results. The viruses were clustered into two clades, which were consistent with the geographic distribution. Three strains identified in Japan were clustered in the Chinese clade, and four strains identified in China and 26 in South Korea were clustered in the Japanese clade. Conclusions. Two clades of SFTSV may have evolved separately over time. On rare occasions, the viruses were transmitted overseas to the region in which viruses of the other clade were prevalent.

Keywords

Severe fever with thrombocytopenia syndrome; SFTS, SFTS virus; tick borne virus infection; bunyavirus

External links

• PMID: 257627

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17059
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref24163,
  	 author = {Tomoki  Yoshikawa and Masayuki  Shimojima and Shuetsu  Fukushi and Hideki  Tani and Aiko  Fukuma and Satoshi  Taniguchi and Harpal  Singh and Yuto  Suda and Komei  Shirabe and Shoichi  Toda and Yukie  Shimazu and Taro  Nomachi and Mutsuyo  Gokuden and Toshiharu  Morimitsu and Katsuyuki  Ando and Akira  Yoshikawa and Miki  Kan and Marina  Uramoto and Hideo  Osako and Kouji  Kida and Hirokazu  Takimoto and Hiroaki  Kitamoto and Fumio  Terasoma and Akiko  Honda and Ken  Maeda and Toru  Takahashi and Takuya  Yamagishi and Kazunori  Oishi and Shigeru  Morikawa and Masayuki  Saijo},
  	 title = {Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus},
  	 year = {2015},
  	 keywords = {Severe fever with thrombocytopenia syndrome; SFTS, SFTS virus; tick borne virus infection; bunyavirus},
  	 doi = {},
  	 url = {http://},
  	 pmid = {257627},
  	 journal = {The Journal of Infectious Diseases},
  	 volume = {},
  	 number = {},
  	 pages = {},
  	 abstract = {Background.
  Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne acute infectious disease caused by the SFTS virus (SFTSV). SFTS has been reported in China, South Korea, and Japan as a novel Bunyavirus. Although several molecular epidemiology and phylogenetic studies have been performed, the information obtained was limited, since the analyses included no or only a small number of SFTSV strains from Japan.
  Methods.
  The nucleotide sequences of 75 SFTSV strains in Japan were newly determined directly from the patients' sera. In addition, the sequences of seven strains isolated in vitro were determined and compared with those in the patients' sera. More than 90 strains that were identified in China, one strain in South Korea, and 50 strains in Japan were phylogenetically analyzed.
  Results.
  The viruses were clustered into two clades, which were consistent with the geographic distribution. Three strains identified in Japan were clustered in the Chinese clade, and four strains identified in China and 26 in South Korea were clustered in the Japanese clade.
  Conclusions.
  Two clades of SFTSV may have evolved separately over time. On rare occasions, the viruses were transmitted overseas to the region in which viruses of the other clade were prevalent.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 24163
  AU  - Yoshikawa,Tomoki 
  AU  - Shimojima,Masayuki 
  AU  - Fukushi,Shuetsu 
  AU  - Tani,Hideki 
  AU  - Fukuma,Aiko 
  AU  - Taniguchi,Satoshi 
  AU  - Singh,Harpal 
  AU  - Suda,Yuto 
  AU  - Shirabe,Komei 
  AU  - Toda,Shoichi 
  AU  - Shimazu,Yukie 
  AU  - Nomachi,Taro 
  AU  - Gokuden,Mutsuyo 
  AU  - Morimitsu,Toshiharu 
  AU  - Ando,Katsuyuki 
  AU  - Yoshikawa,Akira 
  AU  - Kan,Miki 
  AU  - Uramoto,Marina 
  AU  - Osako,Hideo 
  AU  - Kida,Kouji 
  AU  - Takimoto,Hirokazu 
  AU  - Kitamoto,Hiroaki 
  AU  - Terasoma,Fumio 
  AU  - Honda,Akiko 
  AU  - Maeda,Ken 
  AU  - Takahashi,Toru 
  AU  - Yamagishi,Takuya 
  AU  - Oishi,Kazunori 
  AU  - Morikawa,Shigeru 
  AU  - Saijo,Masayuki 
  T1  - Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus
  PY  - 2015
  KW  - Severe fever with thrombocytopenia syndrome; SFTS
  KW  - SFTS virus; tick borne virus infection; bunyavirus
  UR  - http://dx.doi.org/
  N2  - Background.
  Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne acute infectious disease caused by the SFTS virus (SFTSV). SFTS has been reported in China, South Korea, and Japan as a novel Bunyavirus. Although several molecular epidemiology and phylogenetic studies have been performed, the information obtained was limited, since the analyses included no or only a small number of SFTSV strains from Japan.
  Methods.
  The nucleotide sequences of 75 SFTSV strains in Japan were newly determined directly from the patients' sera. In addition, the sequences of seven strains isolated in vitro were determined and compared with those in the patients' sera. More than 90 strains that were identified in China, one strain in South Korea, and 50 strains in Japan were phylogenetically analyzed.
  Results.
  The viruses were clustered into two clades, which were consistent with the geographic distribution. Three strains identified in Japan were clustered in the Chinese clade, and four strains identified in China and 26 in South Korea were clustered in the Japanese clade.
  Conclusions.
  Two clades of SFTSV may have evolved separately over time. On rare occasions, the viruses were transmitted overseas to the region in which viruses of the other clade were prevalent.
  L3  - 
  JF  - The Journal of Infectious Diseases
  VL  - 
  IS  - 
  ER  -