TreeBASE Search-Citation for study 18829

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Citation for Study 18829

Citation title: "Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.".

Study name: "Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.".

This study is part of submission 18829 (Status: Published).

Citation

Suzuki M., Segawa T., Mori H., Akiyoshi A., Ootsuki R., Kurihara A., Kitayama T., Abe T., Kogame K., & Nozaki H. 2016. Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov. PLOS One, .

Authors

Suzuki M.
Segawa T.
Mori H.
Akiyoshi A.
Ootsuki R.
Kurihara A.
Kitayama T.
Abe T.
Kogame K.
Nozaki H.

Abstract

Liagora japonica is a red algal species distributed in temperate regions of Japan. The species has not been collected from its type locality on the Pacific coast of Japan since 1927, and seems to have become extinct from the vicinity. To molecularly characterize L. japonica, we extracted DNA from topotype material of L. japonica collected in 1927, analyzed nine genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and an examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and the involucral filaments initiated only from the subcortical cell on the supporting cell.

Keywords

extinct species; florideophycean red algae; next-generation sequencing; new genus; old specimen; phylogenetic analysis; seaweed; taxonomy

External links

About this resource

Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18829
Other versions: Nexus NeXML

Show BibTeX reference

		@ARTICLE{TreeBASE2Ref25526,
	 author = {Masahiro  Suzuki and Takahiro  Segawa and Hiroshi  Mori and Ayumi  Akiyoshi and Ryo  Ootsuki and Akira  Kurihara and Taiju  Kitayama and Tsuyoshi  Abe and Kazuhiro  Kogame and Hisayoshi  Nozaki},
	 title = {Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.},
	 year = {2016},
	 keywords = {extinct species; florideophycean red algae; next-generation sequencing; new genus; old specimen; phylogenetic analysis; seaweed; taxonomy},
	 doi = {},
	 url = {http://},
	 pmid = {},
	 journal = {PLOS One},
	 volume = {},
	 number = {},
	 pages = {},
	 abstract = {Liagora japonica is a red algal species distributed in temperate regions of Japan. The species has not been collected from its type locality on the Pacific coast of Japan since 1927, and seems to have become extinct from the vicinity. To molecularly characterize L. japonica, we extracted DNA from topotype material of L. japonica collected in 1927, analyzed nine genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and an examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and the involucral filaments initiated only from the subcortical cell on the supporting cell.}
}

Show RIS reference

TY - JOUR
ID - 25526
AU - Suzuki,Masahiro
AU - Segawa,Takahiro
AU - Mori,Hiroshi
AU - Akiyoshi,Ayumi
AU - Ootsuki,Ryo
AU - Kurihara,Akira
AU - Kitayama,Taiju
AU - Abe,Tsuyoshi
AU - Kogame,Kazuhiro
AU - Nozaki,Hisayoshi
T1 - Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.
PY - 2016
KW - extinct species; florideophycean red algae; next-generation sequencing; new genus; old specimen; phylogenetic analysis; seaweed; taxonomy
UR - http://dx.doi.org/
N2 - Liagora japonica is a red algal species distributed in temperate regions of Japan. The species has not been collected from its type locality on the Pacific coast of Japan since 1927, and seems to have become extinct from the vicinity. To molecularly characterize L. japonica, we extracted DNA from topotype material of L. japonica collected in 1927, analyzed nine genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and an examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and the involucral filaments initiated only from the subcortical cell on the supporting cell.
L3 -
JF - PLOS One
VL -
IS -
ER -