@ARTICLE{TreeBASE2Ref26167,
author = {Jiyeon Kim and Elizabeth Kern and Taeho Kim and Mikang Sim and Jaebum Kim and Yuseob Kim and Chungoo Park and Steven A. Nadler and Joong-Ki Park},
title = {Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.},
year = {2017},
keywords = {Plectida, Plectus acuminatus, Plectus aquatilis, Mitogenome, Molecular phylogeny, Nematoda},
doi = {10.1016/j.ympev.2016.10.010},
url = {http://},
pmid = {},
journal = {Molecular Phylogentics and Evolution},
volume = {107},
number = {},
pages = {90--102},
abstract = {Plectida is an important nematode order with species that occupy many different biological niches. The order includes free-living aquatic and soil-dwelling species, but its phylogenetic position has remained uncertain. We sequenced the complete mitochondrial genomes of two members of this order, Plectus acuminatus and Plectus aquatilis and compared them with those of other major nematode clades. The genome size and base composition of these species are similar to other nematodes; 14,831 and 14,372 bp, respectively with AT contents of 71.0% and 70.1%. Gene content was also similar to other nematodes, but their gene order and coding direction was dissimilar from other chromadorean species. P. acuminatus and P. aquatilis are the first chromadorean species found to contain a gene inversion. We reconstructed mitochondrial genome phylogenetic trees using nucleotide and amino acid datasets from 807 nematodes that represent major nematode clades, including the Plectus sequences. Trees from phylogenetic analyses using maximum likelihood and Bayesian methods depicted Plectida as the sister group to all other chromadorean nematodes. This finding is consistent with several phylogenetic results based on SSU rDNA, but disagrees with a classification based on morphology.}
}
Citation for Study 19656
Citation title:
"Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.".
Study name:
"Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.".
This study is part of submission 19656
(Status: Published).
Citation
Kim J., Kern E., Kim T., Sim M., Kim J., Kim Y., Park C., Nadler S., & Park J. 2017. Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea. Molecular Phylogentics and Evolution, 107: 90-102.
Authors
-
Kim J.
82432612843
-
Kern E.
-
Kim T.
(submitter)
+82-10-6644-0817
-
Sim M.
-
Kim J.
-
Kim Y.
-
Park C.
-
Nadler S.
-
Park J.
Abstract
Plectida is an important nematode order with species that occupy many different biological niches. The order includes free-living aquatic and soil-dwelling species, but its phylogenetic position has remained uncertain. We sequenced the complete mitochondrial genomes of two members of this order, Plectus acuminatus and Plectus aquatilis and compared them with those of other major nematode clades. The genome size and base composition of these species are similar to other nematodes; 14,831 and 14,372 bp, respectively with AT contents of 71.0% and 70.1%. Gene content was also similar to other nematodes, but their gene order and coding direction was dissimilar from other chromadorean species. P. acuminatus and P. aquatilis are the first chromadorean species found to contain a gene inversion. We reconstructed mitochondrial genome phylogenetic trees using nucleotide and amino acid datasets from 807 nematodes that represent major nematode clades, including the Plectus sequences. Trees from phylogenetic analyses using maximum likelihood and Bayesian methods depicted Plectida as the sister group to all other chromadorean nematodes. This finding is consistent with several phylogenetic results based on SSU rDNA, but disagrees with a classification based on morphology.
Keywords
Plectida, Plectus acuminatus, Plectus aquatilis, Mitogenome, Molecular phylogeny, Nematoda
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S19656
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- Show BibTeX reference
@ARTICLE{TreeBASE2Ref26167,
author = {Jiyeon Kim and Elizabeth Kern and Taeho Kim and Mikang Sim and Jaebum Kim and Yuseob Kim and Chungoo Park and Steven A. Nadler and Joong-Ki Park},
title = {Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.},
year = {2017},
keywords = {Plectida, Plectus acuminatus, Plectus aquatilis, Mitogenome, Molecular phylogeny, Nematoda},
doi = {10.1016/j.ympev.2016.10.010},
url = {http://},
pmid = {},
journal = {Molecular Phylogentics and Evolution},
volume = {107},
number = {},
pages = {90--102},
abstract = {Plectida is an important nematode order with species that occupy many different biological niches. The order includes free-living aquatic and soil-dwelling species, but its phylogenetic position has remained uncertain. We sequenced the complete mitochondrial genomes of two members of this order, Plectus acuminatus and Plectus aquatilis and compared them with those of other major nematode clades. The genome size and base composition of these species are similar to other nematodes; 14,831 and 14,372 bp, respectively with AT contents of 71.0% and 70.1%. Gene content was also similar to other nematodes, but their gene order and coding direction was dissimilar from other chromadorean species. P. acuminatus and P. aquatilis are the first chromadorean species found to contain a gene inversion. We reconstructed mitochondrial genome phylogenetic trees using nucleotide and amino acid datasets from 807 nematodes that represent major nematode clades, including the Plectus sequences. Trees from phylogenetic analyses using maximum likelihood and Bayesian methods depicted Plectida as the sister group to all other chromadorean nematodes. This finding is consistent with several phylogenetic results based on SSU rDNA, but disagrees with a classification based on morphology.}
}
- Show RIS reference
TY - JOUR
ID - 26167
AU - Kim,Jiyeon
AU - Kern,Elizabeth
AU - Kim,Taeho
AU - Sim,Mikang
AU - Kim,Jaebum
AU - Kim,Yuseob
AU - Park,Chungoo
AU - Nadler,Steven A.
AU - Park,Joong-Ki
T1 - Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.
PY - 2017
KW - Plectida
KW - Plectus acuminatus
KW - Plectus aquatilis
KW - Mitogenome
KW - Molecular phylogeny
KW - Nematoda
UR - http://dx.doi.org/10.1016/j.ympev.2016.10.010
N2 - Plectida is an important nematode order with species that occupy many different biological niches. The order includes free-living aquatic and soil-dwelling species, but its phylogenetic position has remained uncertain. We sequenced the complete mitochondrial genomes of two members of this order, Plectus acuminatus and Plectus aquatilis and compared them with those of other major nematode clades. The genome size and base composition of these species are similar to other nematodes; 14,831 and 14,372 bp, respectively with AT contents of 71.0% and 70.1%. Gene content was also similar to other nematodes, but their gene order and coding direction was dissimilar from other chromadorean species. P. acuminatus and P. aquatilis are the first chromadorean species found to contain a gene inversion. We reconstructed mitochondrial genome phylogenetic trees using nucleotide and amino acid datasets from 807 nematodes that represent major nematode clades, including the Plectus sequences. Trees from phylogenetic analyses using maximum likelihood and Bayesian methods depicted Plectida as the sister group to all other chromadorean nematodes. This finding is consistent with several phylogenetic results based on SSU rDNA, but disagrees with a classification based on morphology.
L3 - 10.1016/j.ympev.2016.10.010
JF - Molecular Phylogentics and Evolution
VL - 107
IS -
SP - 90
EP - 102
ER -
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