@ARTICLE{TreeBASE2Ref26211,
author = {Yongil Yang and Jessy Labbe and Wellington Muchero and Xiaohan Yang and Sara Jawdy and Megan Kennedy and Jenifer Johnson and Avinash Sreedasyam and Jeremy Schmutz and Gerald A. Tuskan and Jin-Gui Chen},
title = {Genome-wide analysis of lectin receptor-like kinases in Populus},
year = {2016},
keywords = {Lectin domain, Lectin receptor-like kinase (LecRLK), Populus, Perennial woody plant, Receptor like-kinase (RLK), Transmembrane kinase},
doi = {},
url = {http://},
pmid = {},
journal = {BMC genomics},
volume = {},
number = {},
pages = {},
abstract = {Background: Receptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extracellular carbohydrate-binding lectin domain and play important roles in plant development and innate immunity. There are 75 and 173 LecRLKs in Arabidopsis and rice, respectively. However, little is known about LecRLKs in the perennial woody plants.
Results: Here we report the genome-wide analysis of classification, domain architecture and expression of LecRLKs in the perennial woody model plant Populus. We found that the LecRLK family has expanded in Populus to a total of 231, including 180 G-type, 50 L-type and 1 C-type Populus LecRLKs (PtLecRLKs). Expansion of the PtLecRLKs occurred partially through tandem duplication. Based on domain architecture and orientation features, we classified PtLecRLKs into eight different classes. RNA-seq-based transcriptomics analysis revealed diverse expression patterns of PtLecRLK genes among leaves, stems, roots, buds and reproductive tissues and organs.
Conclusions: This study offers a comprehensive view of LecRLKs in the perennial woody model plant Populus and provides a foundation for functional characterization of this important family of receptor-like kinases.
}
}
Citation for Study 19725
Citation title:
"Genome-wide analysis of lectin receptor-like kinases in Populus".
Study name:
"Genome-wide analysis of lectin receptor-like kinases in Populus".
This study is part of submission 19725
(Status: Published).
Citation
Yang Y., Labbe J., Muchero W., Yang X., Jawdy S., Kennedy M., Johnson J., Sreedasyam A., Schmutz J., Tuskan G.A., & Chen J. 2016. Genome-wide analysis of lectin receptor-like kinases in Populus. BMC genomics, .
Authors
-
Yang Y.
(submitter)
865-241-4705
-
Labbe J.
-
Muchero W.
-
Yang X.
-
Jawdy S.
-
Kennedy M.
-
Johnson J.
-
Sreedasyam A.
-
Schmutz J.
-
Tuskan G.A.
-
Chen J.
Abstract
Background: Receptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extracellular carbohydrate-binding lectin domain and play important roles in plant development and innate immunity. There are 75 and 173 LecRLKs in Arabidopsis and rice, respectively. However, little is known about LecRLKs in the perennial woody plants.
Results: Here we report the genome-wide analysis of classification, domain architecture and expression of LecRLKs in the perennial woody model plant Populus. We found that the LecRLK family has expanded in Populus to a total of 231, including 180 G-type, 50 L-type and 1 C-type Populus LecRLKs (PtLecRLKs). Expansion of the PtLecRLKs occurred partially through tandem duplication. Based on domain architecture and orientation features, we classified PtLecRLKs into eight different classes. RNA-seq-based transcriptomics analysis revealed diverse expression patterns of PtLecRLK genes among leaves, stems, roots, buds and reproductive tissues and organs.
Conclusions: This study offers a comprehensive view of LecRLKs in the perennial woody model plant Populus and provides a foundation for functional characterization of this important family of receptor-like kinases.
Keywords
Lectin domain, Lectin receptor-like kinase (LecRLK), Populus, Perennial woody plant, Receptor like-kinase (RLK), Transmembrane kinase
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S19725
- Other versions:
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- Show BibTeX reference
@ARTICLE{TreeBASE2Ref26211,
author = {Yongil Yang and Jessy Labbe and Wellington Muchero and Xiaohan Yang and Sara Jawdy and Megan Kennedy and Jenifer Johnson and Avinash Sreedasyam and Jeremy Schmutz and Gerald A. Tuskan and Jin-Gui Chen},
title = {Genome-wide analysis of lectin receptor-like kinases in Populus},
year = {2016},
keywords = {Lectin domain, Lectin receptor-like kinase (LecRLK), Populus, Perennial woody plant, Receptor like-kinase (RLK), Transmembrane kinase},
doi = {},
url = {http://},
pmid = {},
journal = {BMC genomics},
volume = {},
number = {},
pages = {},
abstract = {Background: Receptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extracellular carbohydrate-binding lectin domain and play important roles in plant development and innate immunity. There are 75 and 173 LecRLKs in Arabidopsis and rice, respectively. However, little is known about LecRLKs in the perennial woody plants.
Results: Here we report the genome-wide analysis of classification, domain architecture and expression of LecRLKs in the perennial woody model plant Populus. We found that the LecRLK family has expanded in Populus to a total of 231, including 180 G-type, 50 L-type and 1 C-type Populus LecRLKs (PtLecRLKs). Expansion of the PtLecRLKs occurred partially through tandem duplication. Based on domain architecture and orientation features, we classified PtLecRLKs into eight different classes. RNA-seq-based transcriptomics analysis revealed diverse expression patterns of PtLecRLK genes among leaves, stems, roots, buds and reproductive tissues and organs.
Conclusions: This study offers a comprehensive view of LecRLKs in the perennial woody model plant Populus and provides a foundation for functional characterization of this important family of receptor-like kinases.
}
}
- Show RIS reference
TY - JOUR
ID - 26211
AU - Yang,Yongil
AU - Labbe,Jessy
AU - Muchero,Wellington
AU - Yang,Xiaohan
AU - Jawdy,Sara
AU - Kennedy,Megan
AU - Johnson,Jenifer
AU - Sreedasyam,Avinash
AU - Schmutz,Jeremy
AU - Tuskan,Gerald A.
AU - Chen,Jin-Gui
T1 - Genome-wide analysis of lectin receptor-like kinases in Populus
PY - 2016
KW - Lectin domain
KW - Lectin receptor-like kinase (LecRLK)
KW - Populus
KW - Perennial woody plant
KW - Receptor like-kinase (RLK)
KW - Transmembrane kinase
UR - http://dx.doi.org/
N2 - Background: Receptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extracellular carbohydrate-binding lectin domain and play important roles in plant development and innate immunity. There are 75 and 173 LecRLKs in Arabidopsis and rice, respectively. However, little is known about LecRLKs in the perennial woody plants.
Results: Here we report the genome-wide analysis of classification, domain architecture and expression of LecRLKs in the perennial woody model plant Populus. We found that the LecRLK family has expanded in Populus to a total of 231, including 180 G-type, 50 L-type and 1 C-type Populus LecRLKs (PtLecRLKs). Expansion of the PtLecRLKs occurred partially through tandem duplication. Based on domain architecture and orientation features, we classified PtLecRLKs into eight different classes. RNA-seq-based transcriptomics analysis revealed diverse expression patterns of PtLecRLK genes among leaves, stems, roots, buds and reproductive tissues and organs.
Conclusions: This study offers a comprehensive view of LecRLKs in the perennial woody model plant Populus and provides a foundation for functional characterization of this important family of receptor-like kinases.
L3 -
JF - BMC genomics
VL -
IS -
ER -
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