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Citation for Study 20944

Citation title: "Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions".

Study name: "Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions".

This study is part of submission 20944 (Status: Published).

Citation

Ellingham O., David J., & Culham A. 2017. "Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions." In: , eds. Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions. pp. . , .

Authors

• Ellingham O. (submitter) 00447722882788
• David J.
• Culham A.

Abstract

The powdery mildews (Ascomycota, Erysiphales) are a group of obligate biotrophic fungi found on nearly 10,000 angiosperm plant hosts globally including many that are important horticultural and agricultural plants. Infection can greatly reduce the appearance and vigour of the host therefore reducing attractiveness and yields significantly. A reliable and efficient method is required for unambiguous identification of these often cryptic species such that spread to new areas and/or new hosts can be detected rapidly and controlled early. This research aims to combine currently accepted techniques ? host identification, fungal morphological analysis, DNA sequencing of the fungal rDNA ITS region ? with sequencing of additional nuclear DNA regions in order to increase the reliability of the identification process via BLAST, DNA Barcoding, and phylogenetic reconstruction. Samples were collected through the Powdery Mildew Survey (a citizen science scheme), begun in 2014 and concluded in 2016. Generic fungal DNA primers were found to amplify non-powdery mildew species, some of which were mycoparasites, as well as powdery mildews, and were therefore not a useful technique for accurate identification of powdery mildews. Consequently specific primers were developed for the amplification of the β-tubulin, Actin, Chitin synthase, Mcm7, Translation elongation factor 1-α, and Tsr1 regions. Results indicate that several of these regions could be used alongside ITS to increase identification power (reliability and accuracy), with particular regions standing out. These rapid diagnostic techniques could provide a valuable tool for plant quarantine, and plant breeding, particularly for greater security in the movement of plants and plant products in trade.

Keywords

Powdery mildew, Erysiphales, phylogeny, barcoding, diagnostics, identification

External links

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20944
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@INCOLLECTION{TreeBASE2Ref27165,
  	 author = {Oliver  Ellingham and John  David and Alastair  Culham},
  	 title = {Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions},
  	 year = {2017},
  	 keywords = {Powdery mildew, Erysiphales, phylogeny, barcoding, diagnostics, identification},
  	 doi = {},
  	 url = {http://},
  	 pmid = {},
  	 booktitle = {Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions},
  	 isbn = {},
  	 publisher = {},
  	 address = {},
  	 editor = {},
  	 pages = {},
  	 abstract = {The powdery mildews (Ascomycota, Erysiphales) are a group of obligate biotrophic fungi found on nearly 10,000 angiosperm plant hosts globally including many that are important horticultural and agricultural plants. Infection can greatly reduce the appearance and vigour of the host therefore reducing attractiveness and yields significantly. A reliable and efficient method is required for unambiguous identification of these often cryptic species such that spread to new areas and/or new hosts can be detected rapidly and controlled early. This research aims to combine currently accepted techniques ? host identification, fungal morphological analysis, DNA sequencing of the fungal rDNA ITS region ? with sequencing of additional nuclear DNA regions in order to increase the reliability of the identification process via BLAST, DNA Barcoding, and phylogenetic reconstruction. Samples were collected through the Powdery Mildew Survey (a citizen science scheme), begun in 2014 and concluded in 2016. Generic fungal DNA primers were found to amplify non-powdery mildew species, some of which were mycoparasites, as well as powdery mildews, and were therefore not a useful technique for accurate identification of powdery mildews. Consequently specific primers were developed for the amplification of the β-tubulin, Actin, Chitin synthase, Mcm7, Translation elongation factor 1-α, and Tsr1 regions. Results indicate that several of these regions could be used alongside ITS to increase identification power (reliability and accuracy), with particular regions standing out. These rapid diagnostic techniques could provide a valuable tool for plant quarantine, and plant breeding, particularly for greater security in the movement of plants and plant products in trade.}
  }
  		

• Show RIS reference

  		TY  - CHAP
  ID  - 27165
  AU  - Ellingham,Oliver 
  AU  - David,John 
  AU  - Culham,Alastair 
  T1  - Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions
  PY  - 2017
  KW  - Powdery mildew
  KW  - Erysiphales
  KW  - phylogeny
  KW  - barcoding
  KW  - diagnostics
  KW  - identification
  UR  - http://dx.doi.org/
  N2  - The powdery mildews (Ascomycota, Erysiphales) are a group of obligate biotrophic fungi found on nearly 10,000 angiosperm plant hosts globally including many that are important horticultural and agricultural plants. Infection can greatly reduce the appearance and vigour of the host therefore reducing attractiveness and yields significantly. A reliable and efficient method is required for unambiguous identification of these often cryptic species such that spread to new areas and/or new hosts can be detected rapidly and controlled early. This research aims to combine currently accepted techniques ? host identification, fungal morphological analysis, DNA sequencing of the fungal rDNA ITS region ? with sequencing of additional nuclear DNA regions in order to increase the reliability of the identification process via BLAST, DNA Barcoding, and phylogenetic reconstruction. Samples were collected through the Powdery Mildew Survey (a citizen science scheme), begun in 2014 and concluded in 2016. Generic fungal DNA primers were found to amplify non-powdery mildew species, some of which were mycoparasites, as well as powdery mildews, and were therefore not a useful technique for accurate identification of powdery mildews. Consequently specific primers were developed for the amplification of the β-tubulin, Actin, Chitin synthase, Mcm7, Translation elongation factor 1-α, and Tsr1 regions. Results indicate that several of these regions could be used alongside ITS to increase identification power (reliability and accuracy), with particular regions standing out. These rapid diagnostic techniques could provide a valuable tool for plant quarantine, and plant breeding, particularly for greater security in the movement of plants and plant products in trade.
  L3  - 
  TI  - Increasing accuracy of Powdery Mildew (Ascomycota, Erysiphales) identification using previously untapped DNA regions
  SN  - ISBN 
  PB  - 
  CY  - 
  ER  -