@ARTICLE{TreeBASE2Ref29009,
author = {Karin Tremetsberger and Steffen Hameister and David A. Simpson and Karl-Georg Bernhardt},
title = {Contributions to the knowledge of Cambodian Cyperaceae.},
year = {2019},
keywords = {Cyperus, Fimbristylis, internal transcribed spacer, mainland Southeast Asia, phylogeny, structure-based alignment},
doi = {10.1017/S0960428619000015},
url = {http://},
pmid = {},
journal = {Edinburgh Journal of Botany},
volume = {in press},
number = {},
pages = {},
abstract = {To date, there are very few sequence data of Cyperaceae from mainland Southeast Asia. The aim of the present study was to contribute nuclear ribosomal internal transcribed spacer (ITS) sequences of selected species of Cambodian Cyperaceae to the overall phylogeny of the family. We generated ITS sequences of 38 accessions representing 26 species from Cambodia and used these sequences for phylogenetic analysis together with similar sequences from the National Center for Biotechnology Information GenBank. Our results corroborate recent phylogenetic work in the family and largely confirm established tribal relationships. The backbone of the phylogenetic tree of species-rich genera that have undergone rapid radiations is often weakly resolved (e.g. in Fimbristylis and in the C4 clade of Cyperus). Cryptic variation was revealed in the taxonomically difficult group of Fimbristylis dichotoma, with samples of this taxon appearing in two distinct clades within Fimbristylis. Further addition of geographically spread accessions of taxa will improve our understanding of the complex biogeographical history of the genera in the family. Eleocharis koyamae Tremetsb. & D.A.Simpson is proposed as a new name for E. macrorrhiza T.Koyama.}
}
Citation for Study 23576
Citation title:
"Contributions to the knowledge of Cambodian Cyperaceae.".
Study name:
"Contributions to the knowledge of Cambodian Cyperaceae.".
This study is part of submission 23576
(Status: Published).
Citation
Tremetsberger K., Hameister S., Simpson D., & Bernhardt K. 2019. Contributions to the knowledge of Cambodian Cyperaceae. Edinburgh Journal of Botany, in press.
Authors
-
Tremetsberger K.
(submitter)
-
Hameister S.
-
Simpson D.
-
Bernhardt K.
Abstract
To date, there are very few sequence data of Cyperaceae from mainland Southeast Asia. The aim of the present study was to contribute nuclear ribosomal internal transcribed spacer (ITS) sequences of selected species of Cambodian Cyperaceae to the overall phylogeny of the family. We generated ITS sequences of 38 accessions representing 26 species from Cambodia and used these sequences for phylogenetic analysis together with similar sequences from the National Center for Biotechnology Information GenBank. Our results corroborate recent phylogenetic work in the family and largely confirm established tribal relationships. The backbone of the phylogenetic tree of species-rich genera that have undergone rapid radiations is often weakly resolved (e.g. in Fimbristylis and in the C4 clade of Cyperus). Cryptic variation was revealed in the taxonomically difficult group of Fimbristylis dichotoma, with samples of this taxon appearing in two distinct clades within Fimbristylis. Further addition of geographically spread accessions of taxa will improve our understanding of the complex biogeographical history of the genera in the family. Eleocharis koyamae Tremetsb. & D.A.Simpson is proposed as a new name for E. macrorrhiza T.Koyama.
Keywords
Cyperus, Fimbristylis, internal transcribed spacer, mainland Southeast Asia, phylogeny, structure-based alignment
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S23576
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref29009,
author = {Karin Tremetsberger and Steffen Hameister and David A. Simpson and Karl-Georg Bernhardt},
title = {Contributions to the knowledge of Cambodian Cyperaceae.},
year = {2019},
keywords = {Cyperus, Fimbristylis, internal transcribed spacer, mainland Southeast Asia, phylogeny, structure-based alignment},
doi = {10.1017/S0960428619000015},
url = {http://},
pmid = {},
journal = {Edinburgh Journal of Botany},
volume = {in press},
number = {},
pages = {},
abstract = {To date, there are very few sequence data of Cyperaceae from mainland Southeast Asia. The aim of the present study was to contribute nuclear ribosomal internal transcribed spacer (ITS) sequences of selected species of Cambodian Cyperaceae to the overall phylogeny of the family. We generated ITS sequences of 38 accessions representing 26 species from Cambodia and used these sequences for phylogenetic analysis together with similar sequences from the National Center for Biotechnology Information GenBank. Our results corroborate recent phylogenetic work in the family and largely confirm established tribal relationships. The backbone of the phylogenetic tree of species-rich genera that have undergone rapid radiations is often weakly resolved (e.g. in Fimbristylis and in the C4 clade of Cyperus). Cryptic variation was revealed in the taxonomically difficult group of Fimbristylis dichotoma, with samples of this taxon appearing in two distinct clades within Fimbristylis. Further addition of geographically spread accessions of taxa will improve our understanding of the complex biogeographical history of the genera in the family. Eleocharis koyamae Tremetsb. & D.A.Simpson is proposed as a new name for E. macrorrhiza T.Koyama.}
}
- Show RIS reference
TY - JOUR
ID - 29009
AU - Tremetsberger,Karin
AU - Hameister,Steffen
AU - Simpson,David A.
AU - Bernhardt,Karl-Georg
T1 - Contributions to the knowledge of Cambodian Cyperaceae.
PY - 2019
KW - Cyperus
KW - Fimbristylis
KW - internal transcribed spacer
KW - mainland Southeast Asia
KW - phylogeny
KW - structure-based alignment
UR - http://dx.doi.org/10.1017/S0960428619000015
N2 - To date, there are very few sequence data of Cyperaceae from mainland Southeast Asia. The aim of the present study was to contribute nuclear ribosomal internal transcribed spacer (ITS) sequences of selected species of Cambodian Cyperaceae to the overall phylogeny of the family. We generated ITS sequences of 38 accessions representing 26 species from Cambodia and used these sequences for phylogenetic analysis together with similar sequences from the National Center for Biotechnology Information GenBank. Our results corroborate recent phylogenetic work in the family and largely confirm established tribal relationships. The backbone of the phylogenetic tree of species-rich genera that have undergone rapid radiations is often weakly resolved (e.g. in Fimbristylis and in the C4 clade of Cyperus). Cryptic variation was revealed in the taxonomically difficult group of Fimbristylis dichotoma, with samples of this taxon appearing in two distinct clades within Fimbristylis. Further addition of geographically spread accessions of taxa will improve our understanding of the complex biogeographical history of the genera in the family. Eleocharis koyamae Tremetsb. & D.A.Simpson is proposed as a new name for E. macrorrhiza T.Koyama.
L3 - 10.1017/S0960428619000015
JF - Edinburgh Journal of Botany
VL - in press
IS -
ER -
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