@ARTICLE{TreeBASE2Ref29388,
author = {Camila Gazolla Volpiano and Fernando Hayashi Sant'Anna and Adriana Ambrosini and Bruno Britto Lisboa and Luciano Kayser Vargas and Luciane MP Passaglia},
title = {Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis.},
year = {2019},
keywords = {ANI; dDDH; genome-based taxonomy; methylobacteria; phylogenomics.},
doi = {},
url = {http://},
pmid = {},
journal = { International Journal of Systematic and Evolutionary Microbiology},
volume = {},
number = {},
pages = {},
abstract = {Phylogenetic analysis, genome average nucleotide identity (ANI), and digital DNA:DNA hybridization (dDDH) were used to investigate the taxonomic relationship between 18 type strains belonging to the genus Methylobacterium and the recently proposed genus Methylorubrum. Whole-genome comparisons demonstrated that the type strains Methylobacterium phyllosphaerae CBMB27T and Methylobacterium oryzae CBMB20T present a dDDH value of 90.5% and ANI values of 98.93?98.81%, which exceed the species delineation thresholds. These strains also formed well-supported clades in phylogenies reconstructed from the 16S rRNA, gyrB sequences and a concatenation of 139 sequences from single-copy ortholog genes. Similarly, Methylorubrum populi BJ001T and Methylorubrum thiocyanatum JCM 10893T were closely related in the reconstructed phylogenies and exhibit a high degree of genetic relatedness (dDDH: 83.1%, ANI: 98.19 ? 97.80%). Considering all above-mentioned results, Mtr. populi should be considered a later heterotypic synonym of Mtr. thiocyanatum, and Mtb. phyllosphaerae should be considered a later heterotypic synonym of Mtb. oryzae. This study highlights the need for taxonomic revisions based on whole-genome sequence analysis.}
}
Citation for Study 24128
Citation title:
"Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis.".
Study name:
"Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis.".
This study is part of submission 24128
(Status: Published).
Citation
Gazolla volpiano C., Sant'anna F.H., Ambrosini A., Britto lisboa B., Kayser vargas L., & Passaglia L.M. 2019. Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis. International Journal of Systematic and Evolutionary Microbiology, .
Authors
-
Gazolla volpiano C.
(submitter)
-
Sant'anna F.H.
55 51 96457208
-
Ambrosini A.
-
Britto lisboa B.
-
Kayser vargas L.
-
Passaglia L.M.
Abstract
Phylogenetic analysis, genome average nucleotide identity (ANI), and digital DNA:DNA hybridization (dDDH) were used to investigate the taxonomic relationship between 18 type strains belonging to the genus Methylobacterium and the recently proposed genus Methylorubrum. Whole-genome comparisons demonstrated that the type strains Methylobacterium phyllosphaerae CBMB27T and Methylobacterium oryzae CBMB20T present a dDDH value of 90.5% and ANI values of 98.93?98.81%, which exceed the species delineation thresholds. These strains also formed well-supported clades in phylogenies reconstructed from the 16S rRNA, gyrB sequences and a concatenation of 139 sequences from single-copy ortholog genes. Similarly, Methylorubrum populi BJ001T and Methylorubrum thiocyanatum JCM 10893T were closely related in the reconstructed phylogenies and exhibit a high degree of genetic relatedness (dDDH: 83.1%, ANI: 98.19 ? 97.80%). Considering all above-mentioned results, Mtr. populi should be considered a later heterotypic synonym of Mtr. thiocyanatum, and Mtb. phyllosphaerae should be considered a later heterotypic synonym of Mtb. oryzae. This study highlights the need for taxonomic revisions based on whole-genome sequence analysis.
Keywords
ANI; dDDH; genome-based taxonomy; methylobacteria; phylogenomics.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S24128
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- Show BibTeX reference
@ARTICLE{TreeBASE2Ref29388,
author = {Camila Gazolla Volpiano and Fernando Hayashi Sant'Anna and Adriana Ambrosini and Bruno Britto Lisboa and Luciano Kayser Vargas and Luciane MP Passaglia},
title = {Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis.},
year = {2019},
keywords = {ANI; dDDH; genome-based taxonomy; methylobacteria; phylogenomics.},
doi = {},
url = {http://},
pmid = {},
journal = { International Journal of Systematic and Evolutionary Microbiology},
volume = {},
number = {},
pages = {},
abstract = {Phylogenetic analysis, genome average nucleotide identity (ANI), and digital DNA:DNA hybridization (dDDH) were used to investigate the taxonomic relationship between 18 type strains belonging to the genus Methylobacterium and the recently proposed genus Methylorubrum. Whole-genome comparisons demonstrated that the type strains Methylobacterium phyllosphaerae CBMB27T and Methylobacterium oryzae CBMB20T present a dDDH value of 90.5% and ANI values of 98.93?98.81%, which exceed the species delineation thresholds. These strains also formed well-supported clades in phylogenies reconstructed from the 16S rRNA, gyrB sequences and a concatenation of 139 sequences from single-copy ortholog genes. Similarly, Methylorubrum populi BJ001T and Methylorubrum thiocyanatum JCM 10893T were closely related in the reconstructed phylogenies and exhibit a high degree of genetic relatedness (dDDH: 83.1%, ANI: 98.19 ? 97.80%). Considering all above-mentioned results, Mtr. populi should be considered a later heterotypic synonym of Mtr. thiocyanatum, and Mtb. phyllosphaerae should be considered a later heterotypic synonym of Mtb. oryzae. This study highlights the need for taxonomic revisions based on whole-genome sequence analysis.}
}
- Show RIS reference
TY - JOUR
ID - 29388
AU - Gazolla Volpiano,Camila
AU - Sant'Anna,Fernando Hayashi
AU - Ambrosini,Adriana
AU - Britto Lisboa,Bruno
AU - Kayser Vargas,Luciano
AU - Passaglia,Luciane MP
T1 - Reclassification of Methylorubrum populi as a later heterotypic synonym of Methylorubrum thiocyanatum, and Methylobacterium phyllosphaerae as a later heterotypic synonym of Methylobacterium oryzae based on whole-genome sequence analysis.
PY - 2019
KW - ANI; dDDH; genome-based taxonomy; methylobacteria; phylogenomics.
UR - http://dx.doi.org/
N2 - Phylogenetic analysis, genome average nucleotide identity (ANI), and digital DNA:DNA hybridization (dDDH) were used to investigate the taxonomic relationship between 18 type strains belonging to the genus Methylobacterium and the recently proposed genus Methylorubrum. Whole-genome comparisons demonstrated that the type strains Methylobacterium phyllosphaerae CBMB27T and Methylobacterium oryzae CBMB20T present a dDDH value of 90.5% and ANI values of 98.93?98.81%, which exceed the species delineation thresholds. These strains also formed well-supported clades in phylogenies reconstructed from the 16S rRNA, gyrB sequences and a concatenation of 139 sequences from single-copy ortholog genes. Similarly, Methylorubrum populi BJ001T and Methylorubrum thiocyanatum JCM 10893T were closely related in the reconstructed phylogenies and exhibit a high degree of genetic relatedness (dDDH: 83.1%, ANI: 98.19 ? 97.80%). Considering all above-mentioned results, Mtr. populi should be considered a later heterotypic synonym of Mtr. thiocyanatum, and Mtb. phyllosphaerae should be considered a later heterotypic synonym of Mtb. oryzae. This study highlights the need for taxonomic revisions based on whole-genome sequence analysis.
L3 -
JF - International Journal of Systematic and Evolutionary Microbiology
VL -
IS -
ER -
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