@ARTICLE{TreeBASE2Ref29957,
author = {Liping Nie and Yingxian Cui and Xinlian Chen and Zhichao Xu and Wei Sun and Yu Wang and Jingyuan Song and Hui Yao},
title = {Complete chloroplast genome sequence of the medicinal plant Arctium lappa.},
year = {2019},
keywords = {Arctium lappa, chloroplast genome, molecular structure, phylogenetic relationship},
doi = {10.1139/gen-2019-0070},
url = {http://},
pmid = {},
journal = {Genome},
volume = {3},
number = {},
pages = {1--8},
abstract = {Arctium lappa, also named burdock, has a long medicinal and edible history. It has recently gained increasing attention because of its economic value. In this study, we obtained the complete chloroplast genome of A. lappa by Illumina Hiseq. The complete chloroplast genome of A. lappa is a typical circular structure with 152,708 bp in length. The GC content in the whole chloroplast genome of A. lappa is 37.7%. A total of 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes were successfully annotated. And the chloroplast genome contains 113 unique genes, 19 of which are duplicated in the inverted repeat. The distribution of 39 simple sequence repeats was analysed, and most of them are located in the large single-copy (LSC) sequence. An inversion comprising 16 genes was found in the LSC region, which is 26,283 bp long. We performed multiple sequence alignments using 72 common protein-coding genes of 29 species and constructed the Maximum Parsimony (MP) tree. The MP phylogenetic result shows that A. lappa grouped together with Carthamus tinctorius, Centaurea diffusa and Saussurea involucrate. The chloroplast genome of A. lappa can provide solid foundation for species identification, molecular breeding and phylogenetic relationship of Asteraceae species.}
}
Citation for Study 25002
Citation title:
"Complete chloroplast genome sequence of the medicinal plant Arctium lappa.".
Study name:
"Complete chloroplast genome sequence of the medicinal plant Arctium lappa.".
This study is part of submission 25002
(Status: Published).
Citation
Nie L., Cui Y., Chen X., Xu Z., Sun W., Wang Y., Song J., & Yao H. 2019. Complete chloroplast genome sequence of the medicinal plant Arctium lappa. Genome, 3: 1-8.
Authors
-
Nie L.
-
Cui Y.
-
Chen X.
-
Xu Z.
-
Sun W.
-
Wang Y.
-
Song J.
-
Yao H.
(submitter)
Abstract
Arctium lappa, also named burdock, has a long medicinal and edible history. It has recently gained increasing attention because of its economic value. In this study, we obtained the complete chloroplast genome of A. lappa by Illumina Hiseq. The complete chloroplast genome of A. lappa is a typical circular structure with 152,708 bp in length. The GC content in the whole chloroplast genome of A. lappa is 37.7%. A total of 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes were successfully annotated. And the chloroplast genome contains 113 unique genes, 19 of which are duplicated in the inverted repeat. The distribution of 39 simple sequence repeats was analysed, and most of them are located in the large single-copy (LSC) sequence. An inversion comprising 16 genes was found in the LSC region, which is 26,283 bp long. We performed multiple sequence alignments using 72 common protein-coding genes of 29 species and constructed the Maximum Parsimony (MP) tree. The MP phylogenetic result shows that A. lappa grouped together with Carthamus tinctorius, Centaurea diffusa and Saussurea involucrate. The chloroplast genome of A. lappa can provide solid foundation for species identification, molecular breeding and phylogenetic relationship of Asteraceae species.
Keywords
Arctium lappa, chloroplast genome, molecular structure, phylogenetic relationship
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S25002
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref29957,
author = {Liping Nie and Yingxian Cui and Xinlian Chen and Zhichao Xu and Wei Sun and Yu Wang and Jingyuan Song and Hui Yao},
title = {Complete chloroplast genome sequence of the medicinal plant Arctium lappa.},
year = {2019},
keywords = {Arctium lappa, chloroplast genome, molecular structure, phylogenetic relationship},
doi = {10.1139/gen-2019-0070},
url = {http://},
pmid = {},
journal = {Genome},
volume = {3},
number = {},
pages = {1--8},
abstract = {Arctium lappa, also named burdock, has a long medicinal and edible history. It has recently gained increasing attention because of its economic value. In this study, we obtained the complete chloroplast genome of A. lappa by Illumina Hiseq. The complete chloroplast genome of A. lappa is a typical circular structure with 152,708 bp in length. The GC content in the whole chloroplast genome of A. lappa is 37.7%. A total of 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes were successfully annotated. And the chloroplast genome contains 113 unique genes, 19 of which are duplicated in the inverted repeat. The distribution of 39 simple sequence repeats was analysed, and most of them are located in the large single-copy (LSC) sequence. An inversion comprising 16 genes was found in the LSC region, which is 26,283 bp long. We performed multiple sequence alignments using 72 common protein-coding genes of 29 species and constructed the Maximum Parsimony (MP) tree. The MP phylogenetic result shows that A. lappa grouped together with Carthamus tinctorius, Centaurea diffusa and Saussurea involucrate. The chloroplast genome of A. lappa can provide solid foundation for species identification, molecular breeding and phylogenetic relationship of Asteraceae species.}
}
- Show RIS reference
TY - JOUR
ID - 29957
AU - Nie,Liping
AU - Cui,Yingxian
AU - Chen,Xinlian
AU - Xu,Zhichao
AU - Sun,Wei
AU - Wang,Yu
AU - Song,Jingyuan
AU - Yao,Hui
T1 - Complete chloroplast genome sequence of the medicinal plant Arctium lappa.
PY - 2019
KW - Arctium lappa
KW - chloroplast genome
KW - molecular structure
KW - phylogenetic relationship
UR - http://dx.doi.org/10.1139/gen-2019-0070
N2 - Arctium lappa, also named burdock, has a long medicinal and edible history. It has recently gained increasing attention because of its economic value. In this study, we obtained the complete chloroplast genome of A. lappa by Illumina Hiseq. The complete chloroplast genome of A. lappa is a typical circular structure with 152,708 bp in length. The GC content in the whole chloroplast genome of A. lappa is 37.7%. A total of 37 tRNA genes, 8 rRNA genes and 87 protein-coding genes were successfully annotated. And the chloroplast genome contains 113 unique genes, 19 of which are duplicated in the inverted repeat. The distribution of 39 simple sequence repeats was analysed, and most of them are located in the large single-copy (LSC) sequence. An inversion comprising 16 genes was found in the LSC region, which is 26,283 bp long. We performed multiple sequence alignments using 72 common protein-coding genes of 29 species and constructed the Maximum Parsimony (MP) tree. The MP phylogenetic result shows that A. lappa grouped together with Carthamus tinctorius, Centaurea diffusa and Saussurea involucrate. The chloroplast genome of A. lappa can provide solid foundation for species identification, molecular breeding and phylogenetic relationship of Asteraceae species.
L3 - 10.1139/gen-2019-0070
JF - Genome
VL - 3
IS -
SP - 1
EP - 8
ER -
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