@ARTICLE{TreeBASE2Ref20469,
author = {Joshua Mark Birkebak and Jordan R Mayor and Karl Martin Ryberg and Patrick Brandon Matheny},
title = {A systematic, morphological, and ecological overview of the Clavariaceae},
year = {2012},
keywords = {Agaricales, ericoid mycorrhizae, taxonomy},
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {The Clavariaceae is a diverse assemblage of mushroom-forming fungi composed of simple clubs and coralloid, lamellate-stipitate, hydnoid, and resupinate species. However, a broad assessment of systematic relationships within the family has yet to be performed. Here we present a systematic and ecological overview of the Clavariaceae based on phylogenetic analysis of sequences of the nuclear large subunit ribosomal RNA (nLSU). 79 sequences from vouchered herbarium specimens (46 generated here; nine from type specimens) that represent all know generic and subgeneric taxa of the Clavariaceae were merged with 180 environmental sequences from GenBank and analyzed phylogenetically to determine major groupings within the family. Stable isotope ratios of carbon and nitrogen were measured from specimens representing most major phylogenetic lineages to predict trophic strategies within the Clavariaceae. Four major monophyletic groups were recovered. The lamellate-stipitate genus Camarophyllopsis, however, is polyphyletic and nested within a paraphyletic Clavaria. The monotypic genus Clavicorona is nested within Clavaria, and Scytinopogon, a previously suspected member of the Clavariaceae shares phylogenetic affinities with the Trechisporales. Differing classification schemes for the genera Ramariopsis and Clavulinopsis are compared and neither is entirely consistent with the molecular phylogeny. A discussion of morphological characters traditionally used in Clavariaceae taxonomy in light of inferred phylogenetic relationships is presented. Both molecular phylogenetic analysis of environmental sequences and analysis of stable isotope ratios suggest that most non-lignicolous species of Clavariaceae feature a biotrophic mode of nutrition.}
}
Taxa for matrix 11743 of Study 12414
Citation title:
"A systematic, morphological, and ecological overview of the Clavariaceae".
Study name:
"A systematic, morphological, and ecological overview of the Clavariaceae".
This study is part of submission 12414
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
719005 |
Phlebiella pseudotsugae AY586696 |
693291
|
3044938
|
718991 |
Phlebiella vaga KHL11065 EU118661 |
301136
|
3166543
|
719014 |
Porpomyces mucidus 220 AF347092 |
156595
|
3027625
|
718981 |
Porpomyces mucidus 334 AF347091 |
156595
|
3027625
|
718989 |
Porpomyces mucidus 65 AF347093 |
156595
|
3027625
|
718999 |
Porpomyces mucidus BRNM 710171 FJ496696 |
156595
|
3027625
|
718979 |
Scytinopogon angulispora TFB13611 |
|
|
719016 |
Sistotremastrum niveocremeum AF347094 |
139134
|
3186409
|
719006 |
Sistotremastrum sp FO36293b AJ406425 |
|
|
718995 |
Sistotremastrum suecicum KHL11849 EU118667 |
467971
|
3186410
|
719011 |
Subulicystidium longisporum AJ406422 |
139138
|
3217043
|
718998 |
Subulicystidium longisporum AJ406423 |
139138
|
3217043
|
719015 |
Subulicystidium sp KHL10780 AY586714 |
|
|
719002 |
Trechispora alnicola AFTOLID 665 AY635768 |
282310
|
3217389
|
718982 |
Trechispora araneosa 214 AF347084 |
156597
|
3262665
|
719013 |
Trechispora confinis 335 AF347081 |
156598
|
3217394
|
719012 |
Trechispora confinis AY586719 |
156598
|
3217394
|
718986 |
Trechispora farinacea 27 AF347082 |
156599
|
3217396
|
719000 |
Trechispora farinacea 28 AF347083 |
156599
|
3217396
|
719004 |
Trechispora farinacea 356 AF347089 |
156599
|
3217396
|
718990 |
Trechispora hymenocystis 362 AF347090 |
156600
|
3235002
|
718984 |
Trechispora incisa 257 AF347085 |
156601
|
3278731
|
718980 |
Trechispora kavinioides 260 AF347086 |
156602
|
3044045
|
718996 |
Trechispora nivea AY586720 |
264128
|
3262666
|
718987 |
Trechispora regularis 346 AF347087 |
156603
|
3203254
|
718994 |
Trechispora sp KHL 10715 AF347088 |
|
|
718988 |
Trechispora sp PBM418 AY647217 |
|
|
718997 |
Trechispora sp TMB 17a FJ232039 |
|
|
718983 |
Trechispora sp TMB 19a FJ232040 |
|
|
719003 |
Trechispora sp TMB 21 1 FJ232041 |
|
|
719008 |
Trechispora sp TMB 22 9 FJ232042 |
|
|
718993 |
Trechispora sp TMB38b FJ232043 |
|
|
719009 |
Trechispora subsphaerospora 74 AF347080 |
156604
|
3203256
|
719007 |
Trechispora thelephora UTC 252606 HM104485 |
|
3361205
|
719001 |
Tubulicium vermiculare AJ406424 |
139140
|
3043293
|
718985 |
Tubulicium vermiferum AY463477 |
264113
|
1454782
|
719010 |
Uncultured Basidiomycota 149a 07KBS LTER DQ341964 |
|
|
718992 |
Uncultured Basidiomycota 149a 14KBS LTER DQ341969 |
|
|