@ARTICLE{TreeBASE2Ref23553,
author = {maxime huvet and Michael P.H Stumpf},
title = {Overlapping genes: a window on gene evolvability.},
year = {2014},
keywords = {Overlapping genes, evolution, expression regulation, operon},
doi = {},
url = {http://},
pmid = {},
journal = {BMC genomics},
volume = {},
number = {},
pages = {},
abstract = {Background
The forces underlying genome architecture and organization are still only poorly
understood in detail. Overlapping genes (genes partially or entirely overlapping) represent
a genomic feature that is shared widely between biological organisms ranging from viruses
to multi-cellular organisms. In bacteria, a third of the annotated genes are involved in an
overlap. Despite the widespread nature of this arrangement, its evolutionary origins and
biological ramifications have so far eluded explanation.
Results
Here we present a comparative approach using information from 699 bacterial genomes
that sheds light on the evolutionary dynamics of overlapping genes. We show that these
structures exhibit high levels of plasticity.
Conclusions
We propose a simple model allowing us to explain the observed properties of overlapping
genes based on the importance of initiation and termination of transcriptional and
translational processes. We believe that taking into account the processes leading to the
expression of protein-coding genes hold the key to the understanding of overlapping
genes structures.}
}
Taxa for matrix 7946 of Study 16248
Citation title:
"Overlapping genes: a window on gene evolvability.".
Study name:
"Overlapping genes: a window on gene evolvability.".
This study is part of submission 16248
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
474071 |
Actinoseta chelispara |
|
|
474014 |
Actinoseta hummelincki |
|
4820690
|
474032 |
Actinoseta jonesi |
|
6951195
|
474028 |
Alphaleberis alphathrix |
|
6951197
|
474096 |
Amboleberis americana |
|
517098
|
474024 |
Archasterope altrix |
|
6225058
|
474016 |
Archasterope antarctica |
|
|
474034 |
Archasterope apex |
|
6225060
|
473982 |
Archasterope bulla |
519083
|
|
474037 |
Archasterope dentata |
|
|
473987 |
Archasterope efficax |
519005
|
6225062
|
474009 |
Archasterope monothrix |
|
|
474045 |
Archasterope quinquesetae |
|
|
473978 |
Archasterope sp J57065 |
|
|
474021 |
Archasterope verax |
|
6225064
|
474085 |
Asteropella kalkei |
|
4820692
|
473965 |
Asteropella monambon |
519090
|
6951209
|
474006 |
Asteropella mortenseni |
|
|
473967 |
Asteropella slatteryi J57062 |
519091
|
530965
|
474101 |
Asteropteron fuscum |
|
7018190
|
474046 |
Asteropterygion dayi |
|
6951232
|
473977 |
Asteropterygion magnum |
519007
|
6951239
|
474108 |
Asteropterygion oculitristis |
|
6951243
|
473991 |
Asteropterygion peterseni |
|
6951245
|
474056 |
Asteropterygion romei |
|
6951246
|
474064 |
Asteropterygion setiferum |
|
6951247
|
474044 |
Asteropterygion thomassini |
|
6951255
|
474093 |
Bathyleberis babax |
|
6225067
|
473997 |
Bathyleberis garthi |
|
517088
|
474073 |
Bathyleberis grossmani |
|
517084
|
474084 |
Bathyleberis hancocki |
|
517089
|
474011 |
Bathyleberis kurilensis |
|
6794586
|
474072 |
Bathyleberis monothrix |
|
517085
|
473980 |
Bathyleberis oculata |
519009
|
517086
|
474070 |
Bathyleberis thrix |
|
4820700
|
473999 |
Bathyleberis toxotes |
|
4820702
|
474095 |
Bruuniella beta |
|
|
474030 |
Bruuniella breviata |
|
|
474018 |
Bruuniella hazeli |
|
4820704
|
474078 |
Cyclasterope bisetosa |
|
|
474098 |
Cyclasterope fascigera |
|
|
474107 |
Cycloleberis galatheae |
|
|
474023 |
Cycloleberis lobiancoi |
|
2698118
|
473985 |
Cylindroleberididae sp DS 4 |
|
|
473970 |
Cylindroleberididae sp DS 7 |
|
|
473972 |
Cylindroleberididae sp J57074 |
|
|
473960 |
Cylindroleberididae sp J57075 |
|
|
473974 |
Cylindroleberididae sp J57076 |
|
|
474017 |
Cylindroleberis bacescui |
|
|
474039 |
Cylindroleberis grimaldi |
|
|
473976 |
Cylindroleberis marranyin |
519084
|
|
474012 |
Cylindroleberis minuta |
|
|
473986 |
Cylindroleberis sp J57069 |
|
|
473990 |
Cylindroleberis thailandica |
|
|
474088 |
Cylindroleberis variabilis |
|
6476540
|
474062 |
Cylindroleberis verrucosa |
|
|
474089 |
Cylindroleberis vibex |
|
6087539
|
474013 |
Cylindroleberis vix |
|
6087541
|
473996 |
Diasterope grisea |
|
517124
|
474055 |
Diasterope pilosa |
|
517123
|
474077 |
Diasterope procax |
|
5716815
|
474058 |
Diasterope schmitti |
|
517125
|
474042 |
Diasterope wirraka |
|
|
474005 |
Dolasterope johanseni |
|
|
474102 |
Domromeus heptathrix |
|
6591218
|
474080 |
Domromeus merx |
|
6225071
|
473981 |
Euphilomedes sordida |
178843
|
5967395
|
474008 |
Heptonema homelix |
|
6476549
|
474025 |
Heptonema latex |
|
6087549
|
474052 |
Heptonema latum |
|
4820712
|
474069 |
Heptonema serratum |
|
4820714
|
474065 |
Homasterope curta |
|
|
474074 |
Homasterope trebax |
|
6225073
|
473968 |
Leuroleberis mackenziei |
519002
|
6339328
|
474063 |
Leuroleberis sharpei |
|
517118
|
473979 |
Leuroleberis surugaensis |
280371
|
5978817
|
474066 |
Macroasteropteron mindax |
|
6339330
|
473963 |
Manawa staceyi |
178853
|
5967396
|
474000 |
Microasteropteron parvum |
|
|
474057 |
Monasterope bex |
|
|
474043 |
Omegasterope upsilon |
|
|
474060 |
Parasterope aberrata |
|
7189254
|
474067 |
Parasterope anommata |
|
|
474027 |
Parasterope antyx |
|
6591229
|
474033 |
Parasterope crinita |
|
|
473969 |
Parasterope gamurru |
519003
|
|
474097 |
Parasterope maddocksae |
|
6087552
|
474106 |
Parasterope mauritiana |
|
|
474099 |
Parasterope mckenziei |
|
|
474091 |
Parasterope micrommata |
|
|
474001 |
Parasterope muelleri |
|
2698113
|
474081 |
Parasterope pacifica |
|
|
474068 |
Parasterope physinx |
|
6225097
|
474031 |
Parasterope pollex |
178859
|
517092
|
474061 |
Parasterope prolixa |
|
|
474002 |
Parasterope pseudoquadrata |
|
|
474050 |
Parasterope sequax |
|
6225099
|
474094 |
Parasterope sohni |
|
|
473975 |
Parasterope sp J57072 |
|
|
473973 |
Parasterope styx |
521260
|
6591230
|
474015 |
Parasterope whatleyi |
|
6225101
|
474049 |
Parasterope zamboangae |
|
|
473995 |
Parasterope zeta |
|
4820718
|
474087 |
Polyleberis mackenziei |
|
2698122
|
473994 |
Postasterope abaco |
|
|
473988 |
Postasterope barnesi |
519086
|
4820720
|
473966 |
Postasterope corrugata |
519011
|
4820722
|
473962 |
Postasterope messingi |
|
4820724
|
473993 |
Prionotoleberis gyion |
|
2698120
|
474020 |
Prionotoleberis lux |
|
6453778
|
474047 |
Prionotoleberis pax |
|
6591235
|
474103 |
Prionotoleberis rex |
|
6591237
|
474076 |
Prionotoleberis salomani |
|
4820726
|
474022 |
Pteromeniscus intesi |
|
6951286
|
473989 |
Rutiderma apex |
178865
|
4820774
|
474054 |
Skogsbergiella pax |
|
|
474029 |
Skogsbergiella plocus |
|
|
474041 |
Skogsbergiella scotti |
|
|
474040 |
Skogsbergiella senex |
|
6225118
|
473984 |
Skogsbergiella sp DS 3 |
|
|
474079 |
Skogsbergiella spinifera |
|
|
474053 |
Synasterope arnaudi |
|
|
474036 |
Synasterope bassana |
|
517100
|
474075 |
Synasterope bensoni |
|
|
474105 |
Synasterope brachythrix |
|
|
474004 |
Synasterope browni |
|
5716820
|
474086 |
Synasterope calix |
|
6087563
|
474051 |
Synasterope cushmani |
|
4820728
|
474059 |
Synasterope helix |
|
6591241
|
474038 |
Synasterope hirpex |
|
6591242
|
474010 |
Synasterope implumis |
|
517102
|
473992 |
Synasterope longiseta |
|
517104
|
474090 |
Synasterope mystax |
|
|
474019 |
Synasterope polythrix |
|
|
474100 |
Synasterope psitticina |
|
4820730
|
473998 |
Synasterope serrata |
|
517109
|
474092 |
Synasterope setispara |
|
|
473971 |
Synasterope sp J57066 |
|
|
473961 |
Synasterope sp J57067 |
|
|
474026 |
Tetraleberis brevis |
|
6225144
|
474104 |
Tetraleberis pix |
|
6225146
|
473983 |
Tetraleberis sp J57056 |
|
|
474003 |
Tetraleberis triplex |
|
6225149
|
473964 |
Vargula hilgendorfii |
6674
|
5457408
|
474082 |
Xandarasterope storthynx |
|
6225123
|
474035 |
Xandarasterope trux |
|
6225125
|
474083 |
Xenoleberis bex |
|
6339357
|
474007 |
Xenoleberis californica |
|
4820734
|
474048 |
Xenoleberis yamadai |
|
6339358
|