@ARTICLE{TreeBASE2Ref25526,
author = {Masahiro Suzuki and Takahiro Segawa and Hiroshi Mori and Ayumi Akiyoshi and Ryo Ootsuki and Akira Kurihara and Taiju Kitayama and Tsuyoshi Abe and Kazuhiro Kogame and Hisayoshi Nozaki},
title = {Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.},
year = {2016},
keywords = {extinct species; florideophycean red algae; next-generation sequencing; new genus; old specimen; phylogenetic analysis; seaweed; taxonomy},
doi = {},
url = {http://},
pmid = {},
journal = {PLOS One},
volume = {},
number = {},
pages = {},
abstract = {Liagora japonica is a red algal species distributed in temperate regions of Japan. The species has not been collected from its type locality on the Pacific coast of Japan since 1927, and seems to have become extinct from the vicinity. To molecularly characterize L. japonica, we extracted DNA from topotype material of L. japonica collected in 1927, analyzed nine genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and an examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and the involucral filaments initiated only from the subcortical cell on the supporting cell.}
}
Taxa for tree 93607 of Study 18829
Citation title:
"Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.".
Study name:
"Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov.".
This study is part of submission 18829
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
2163040 |
Cumagloia andersonii HM916454 |
31486
|
3871277
|
2163035 |
Izziella orientalis HQ422594 |
284066
|
3529749
|
2163037 |
Liagora albicans HQ422860 |
259032
|
3914165
|
2163043 |
Liagora albicans HQ422866 |
259032
|
3914165
|
2163033 |
Liagora albicans HQ422978 |
259032
|
3914165
|
2163048 |
Liagora boergesenii HQ422649 |
260094
|
1974435
|
2163030 |
Liagora distenta HQ603225 |
|
1986875
|
2163044 |
Liagora donaldiana HQ423078 |
259035
|
3532470
|
2163042 |
Liagora japonica LC066521 |
|
1974444
|
2163045 |
Liagora japonica LC066522 |
|
1974444
|
2162971 |
Liagora japonica LC093498 |
|
1974444
|
2163046 |
Liagora julieae HQ422852 |
259033
|
3532471
|
2163038 |
Liagora pectinata HQ603226 |
|
738757
|
2163036 |
Liagora sp HQ422634 |
|
|
2163032 |
Liagora sp HQ422780 |
|
|
2163031 |
Liagora sp HQ422954 |
|
|
2163039 |
Liagora sp HQ422956 |
|
|
2163034 |
Liagora viscida HQ603227 |
406719
|
3871278
|
2163029 |
Nemalion helminthoides HQ603241 |
35200
|
2640626
|
2163041 |
Nemalion multifidum HQ603240 |
|
1957090
|
2163047 |
Neoizziella divaricata HQ423117 |
259031
|
1986969
|