@ARTICLE{TreeBASE2Ref18541,
author = {Mark Fishbein and Susan R. Kephart and M. Wilder and Kate M. Halpin and Shannon L. Datwyler},
title = {Phylogeny of Camassia (Agavaceae) Inferred from Plastid rpl16 Intron and trnD-trnY-trnE-trnT Intergenic Spacer DNA Sequences: Implications for Species Delimitation.},
year = {2010},
keywords = {accepted},
doi = {10.1600/036364410790862588},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {35},
number = {1},
pages = {77--85},
abstract = {Camassia is a genus of six bulb-forming species endemic to North America that have figured prominently in the culture and sustenance of native peoples. In western North America they form a conspicuous element of wet meadows and forest openings. Species and, especially, subspecies delimitations have been problematic. Further, several hypothesized phylogenetic and biogeographic scenarios for the origin and diversification of the genus remain untested. We estimated the phylogeny of Camassia using two non-coding, plastid DNA regions: rpl16 intron and trnD-trnY-trnE-trnT spacers, with the goals of evaluating 1) the delimitation of species and 2) Gould s hypotheses for the origin of species and infraspecific taxa. Maximum parsimony and Bayesian analyses provided concordant estimates of the phylogeny consistent with the monophyly of eastern American C. scilloides and western American C. howellii and C. leichtlinii. Two western American species were found to be paraphyletic C. cusickii weakly so, but C. quamash was strongly supported as paraphyletic to C. cusickii, C. scilloides and C. angusta. Our results are largely consistent with Gould s views that the genus originated in southwestern Oregon and diversified through eastern migration, and that C. scilloides and C. cusickii are derived from within C. quamash. Despite evidence that Camassia species hybridize, by sampling sympatric populations we detected only a single case of introgression of plastid haplotypes. This study provides the first molecular phylogenetic and phylogeographic context for evaluating evolutionary process and trait variation in this iconic genus of western North America.}
}
Taxa for Study 10050

Citation title:
"Phylogeny of Camassia (Agavaceae) Inferred from Plastid rpl16 Intron and trnD-trnY-trnE-trnT Intergenic Spacer DNA Sequences: Implications for Species Delimitation.".

This study was previously identified under the legacy study ID S2390
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
265418 |
Camassia angusta SCMV |
652137
|
2665921
|
265419 |
Camassia cusickii HC |
81742
|
2662524
|
265409 |
Camassia cusickii PC |
81742
|
2662524
|
265400 |
Camassia howellii HRA |
652138
|
2662525
|
265403 |
Camassia howellii SM |
652138
|
2662525
|
265395 |
Camassia leichtlinii suksdorfii 4H |
0
|
3875311
|
265435 |
Camassia leichtlinii suksdorfii BFV |
0
|
3875311
|
265420 |
Camassia leichtlinii suksdorfii BPL |
0
|
3875311
|
265428 |
Camassia leichtlinii suksdorfii DPK |
0
|
3875311
|
265416 |
Camassia leichtlinii suksdorfii FC |
0
|
3875311
|
265405 |
Camassia leichtlinii suksdorfii HUBSL |
0
|
3875311
|
265421 |
Camassia leichtlinii suksdorfii JKM |
0
|
3875311
|
265404 |
Camassia leichtlinii suksdorfii MDFL |
0
|
3875311
|
265423 |
Camassia leichtlinii suksdorfii PSL |
0
|
3875311
|
265424 |
Camassia leichtlinii suksdorfii SFL |
0
|
3875311
|
265413 |
Camassia leichtlinii suksdorfii TNCL |
0
|
3875311
|
265415 |
Camassia quamash azurea MM |
0
|
3875312
|
265401 |
Camassia quamash azurea WH |
0
|
3875312
|
265426 |
Camassia quamash breviflora DL |
0
|
3875313
|
265411 |
Camassia quamash breviflora FM |
0
|
3875313
|
265438 |
Camassia quamash breviflora PPRV |
0
|
3875313
|
265402 |
Camassia quamash breviflora SHM |
0
|
3875313
|
265407 |
Camassia quamash intermedia CG |
0
|
3875314
|
265440 |
Camassia quamash intermedia PSQ |
0
|
3875314
|
265436 |
Camassia quamash linearis BHQ |
0
|
3875315
|
265417 |
Camassia quamash linearis TB |
0
|
3875315
|
265439 |
Camassia quamash maxima BC |
0
|
3875316
|
265396 |
Camassia quamash maxima BPQ |
0
|
3875316
|
265408 |
Camassia quamash maxima SS |
0
|
3875316
|
265442 |
Camassia quamash maxima TNCQ |
0
|
3875316
|
265430 |
Camassia quamash maxima VIC |
0
|
3875316
|
265412 |
Camassia quamash quamash MTK |
0
|
2662529
|
265431 |
Camassia quamash quamash ROD |
0
|
2662529
|
265406 |
Camassia quamash quamash WP |
0
|
2662529
|
265414 |
Camassia quamash utahensis CM |
0
|
3875317
|
265425 |
Camassia quamash utahensis DMP |
0
|
3875317
|
265441 |
Camassia quamash utahensis GI |
0
|
3875317
|
265437 |
Camassia quamash utahensis MC |
0
|
3875317
|
265399 |
Camassia quamash utahensis SAGV |
0
|
3875317
|
265398 |
Camassia quamash utahensis SR |
0
|
3875317
|
265434 |
Camassia quamash walpolei KR |
0
|
2662530
|
265429 |
Camassia scilloides BEI |
39524
|
2662531
|
265432 |
Camassia scilloides EL |
39524
|
2662531
|
265410 |
Camassia sp SF |
|
|
265422 |
Camassia sp TL |
|
|
265397 |
Chlorogalum pomeridianum |
50240
|
2662538
|
265443 |
Hastingsia alba |
652151
|
2667347
|
265427 |
Hastingsia bracteosa |
652152
|
2667348
|
265433 |
Leucocrinum montanum |
59050
|
2662591
|