@ARTICLE{TreeBASE2Ref16800,
author = {Henrietta Myburg and Marieka Gryzenhout and Brenda D Wingfield and R. Jay Stipes and Michael J Wingfield},
title = {Phylogenetic relationships of Cryphonectria and Endothia species, based on DNA sequence data and morphology},
year = {2004},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {The fungal genera Endothia and Cryphonectria include some of the most important pathogens of forest trees. Despite available new technology, no comprehensive comparative study based on DNA sequence data and morphology has been done on the available isolates representing these two genera. The main objectives of this study were to assess the phylogenetic relationships among species of Cryphonectria and Endothia for which cultures are available, and to establish a taxonomic framework based on DNA sequence and morphological data, which will aid future studies and identification of species residing in these and related genera. Comparisons were based on sequence variation found in the ITS region of the ribosomal RNA operon and two regions of the b-tubulin gene. In addition, the morphology of these species was also examined. The phylogenetic data indicated that Endothia and Cryphonectria reside in two distinct phylogenetic clades. Cryphonectria parasitica, C. macrospora, C. nitschkei, C. eucalypti and C. radicalis represented the Cryphonectria clade. Endothia gyrosa and E. singularis were included in the Endothia clade. An isolate representing E. viridistroma grouped outside the Endothia clade and separately from other groups. Other clades outside the one encompassing Cryphonectria were those represented by the C. cubensis isolates and fungi isolated from Elaeocarpus dentatus originating from New Zealand. These clades could be distinguished from Endothia and Cryphonectria, based on anamorph morphology, stromatal structure and ascospore septation. Cryphonectria and Endothia, therefore, appear to be paraphyletic and taxonomic relationships for these fungi need to be revised.}
}
Taxa for Study 1215
Citation title:
"Phylogenetic relationships of Cryphonectria and Endothia species, based on DNA sequence data and morphology".
This study was previously identified under the legacy study ID S1128
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
34093 |
Cryphonectria cubensis AUSTRALIA CMW 2632 |
305400
|
3034201
|
34104 |
Cryphonectria cubensis BRAZIL CMW 1853 |
305400
|
3034201
|
34098 |
Cryphonectria cubensis CHINA CMW 1840 |
305400
|
3034201
|
34100 |
Cryphonectria cubensis CONGO CMW 10453 |
305400
|
3034201
|
34114 |
Cryphonectria cubensis INDONESIA CMW 8756 |
305400
|
3034201
|
34092 |
Cryphonectria cubensis SOUTH AFRICA CMW 2113 |
305400
|
3034201
|
34111 |
Cryphonectria cubensis SOUTH AFRICA CMW 62 |
305400
|
3034201
|
34097 |
Cryphonectria cubensis SOUTH AFRICA CMW 8755 |
305400
|
3034201
|
34094 |
Cryphonectria cubensis VENEZUELA CMW 8757 |
305400
|
3034201
|
34106 |
Cryphonectria cubensis VENEZUELA CMW 8758 |
305400
|
3034201
|
34103 |
Cryphonectria eucalypti AUSTRALIA CMW 7037 |
179777
|
3958325
|
34095 |
Cryphonectria eucalypti SOUTH AFRICA CMW 7036 |
179777
|
3958325
|
34118 |
Cryphonectria macrospora JAPAN CMW 10463 |
179775
|
3192160
|
34117 |
Cryphonectria nitschkei JAPAN CMW 10518 |
187221
|
3192161
|
34101 |
Cryphonectria parasitica USA CMW 1651 |
5116
|
3872340
|
34115 |
Cryphonectria parasitica USA CMW 1652 |
5116
|
3872340
|
34116 |
Cryphonectria radicalis ITALY CMW 10455 |
40262
|
3192162
|
34096 |
Cryphonectria radicalis ITALY CMW 10477 |
40262
|
3192162
|
34107 |
Cryphonectria radicalis ITALY CMW 10484 |
40262
|
3192162
|
34113 |
Cryphonectria radicalis PORTUGAL CMW 10436 |
40262
|
3192162
|
34099 |
Diaporthe ambigua NETHERLANDS CMW 2498 |
73123
|
3097777
|
34110 |
Endothia gyrosa USA CMW 10442 |
40263
|
1620948
|
34102 |
Endothia gyrosa USA CMW 2091 |
40263
|
1620948
|
34112 |
Endothia singularis USA CMW 10465 |
179774
|
3079745
|
34109 |
Endothia viridistroma USA CMW 10454 |
196311
|
5969302
|
34105 |
Valsaceae Unidentified NEW ZEALAND CMW 10469 |
5117
|
3866289
|
34091 |
Valsaceae Unidentified NEW ZEALAND CMW 10470 |
5117
|
3866289
|
34108 |
Valsaceae Unidentified NEW ZEALAND CMW 10471 |
5117
|
3866289
|