@ARTICLE{TreeBASE2Ref23824,
author = {Fabio Scarpa and Piero Cossu and Daria Sanna and Tiziana Lai and Jon L. Norenburg and Marco Curini-Galletti and Marco Casu},
title = {An 18S and 28S-based clock calibration for marine Proseriata (Platyhelminthes)},
year = {2015},
keywords = {Meiofauna; Isthmus of Panama; mutation rates; relaxed molecular clock; divergence time; calibration point.},
doi = {10.1016/j.jembe.2014.10.020},
url = {http://},
pmid = {},
journal = {Journal of Experimental Marine Biology and Ecology},
volume = {463},
number = {},
pages = {22--31},
abstract = {Geminate species are a powerful tool for calibrating the molecular clock in marine organisms, and their adoption is mandatory for soft-bodied taxa, which lack fossil records. The first attempt to calibrate the molecular clock in taxa belonging to meiofaunal microturbellaria (Platyhelminthes: Proseriata) based on geminate species is presented here. We used two species pairs from both sides of the Isthmus of Panama: Minona gemella (Caribbean) and Minona cf gemella (Pacific); Parotoplana sp. nov. 1 (Caribbean) and Parotoplana sp. nov. 2 (Pacific). The mutation rates per million years were estimated for both geminate species pairs on two ribosomal regions, the complete nuclear small subunit rDNA (18S) gene and the partial nuclear large subunit rDNA (28S) gene fragment (spanning variable domains D1-D6). Similar values of mutation rates per million years were found in both species pairs, ranging 0.12-0.16% for 18S and 0.49-0.52% for 28S. The values obtained were used as calibration points at minimum age, in order to estimate the divergence times within the phylogenetic tree of the whole dataset, and tested on three cases of trans-American (not-geminate) species from Pacific Panama and S-E Brazil, belonging to the genera Kata, Archimonocelis and Duplominona. They consistently showed higher divergence times (ranging 9.4-17.9 Myr) than geminate, trans-isthmian pairs. These results suggest potential usefulness of our molecular clock calibration, for future research on phylogeography and evolution of Proseriata. }
}
Taxa for matrix 24788 of Study 16597

Citation title:
"An 18S and 28S-based clock calibration for marine Proseriata (Platyhelminthes)".

Study name:
"An 18S and 28S-based clock calibration for marine Proseriata (Platyhelminthes)".

This study is part of submission 16597
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1649838 |
Archilopsis arenaria ADRO1 |
|
6594183
|
1649857 |
Archilopsis spinosa ARRO2 |
|
5023801
|
1649840 |
Archimonocelis marci ASPBR2 |
|
|
1649862 |
Archimonocelis marci ASPBR3 |
|
|
1649813 |
Archimonocelis sp. nov. 1 ASPBR1 |
|
|
1649854 |
Archimonocelis sp. nov. 2 ARSPAC1 |
|
|
1649861 |
Archimonocelis sp. nov. 2 ARSPAC2 |
|
|
1649820 |
Archimonocelis sp. nov. 2 ARSPAC32 |
|
|
1649871 |
Archotoplana holotricha Aholo |
101478
|
5024091
|
1649806 |
Archotoplana holotricha KAFA1 |
101478
|
5024091
|
1649787 |
Calviria solaris CsolarisGB |
104908
|
5023624
|
1649819 |
Coelogynopora tenuis CTRO1 |
|
5023706
|
1649833 |
Duplominona brasiliensis DNSPBR1 |
|
|
1649845 |
Duplominona sp. nov. 1 DTLNA1 |
|
|
1649878 |
Duplominona sp. nov. 1 DTLNA2 |
|
|
1649824 |
Duplominona sp. nov. 1 DUPA1 |
|
|
1649868 |
Duplominona sp. nov. 2 DNSPNA3 |
|
|
1649839 |
Duplominona sp. nov. 3 DNSPNA4 |
|
|
1649793 |
Duplominona sp. nov. 3 DNSPNA5 |
|
|
1649844 |
Duplominona sp. nov. DSPBL2 |
|
|
1649852 |
Duplominona sp. nov. DUPLO1 |
|
|
1649789 |
Duplominona sp. nov. DURO1 |
|
|
1649818 |
Duplominona sp. nov. MIFA2 |
|
|
1649808 |
Duplominona sp. nov. MIFA4 |
|
|
1649805 |
Duplominona tridens DTBR1 |
|
5023849
|
1649835 |
Duplominona tridens DTBR2 |
|
5023849
|
1649790 |
Duploperaclistus circocirrus DUIB1 |
|
5023855
|
1649816 |
Duploperaclistus circocirrus DUIB3 |
|
5023855
|
1649856 |
Kata evelinae KBBR1 |
|
5024127
|
1649842 |
Kata evelinae KBBR2 |
|
5024127
|
1649799 |
Kata leroda KSBR1 |
|
5024133
|
1649858 |
Kata leroda KSBR2 |
|
5024133
|
1649853 |
Kata sp. nov. 1 KNSPNA1 |
|
|
1649814 |
Kata sp. nov. 1 KNSPNA2 |
|
|
1649825 |
Kata sp. nov. 2 KNSPNA3 |
|
|
1649803 |
Minona cf gemella MGPAC1 |
|
5023882
|
1649802 |
Minona cf gemella MGPAC2 |
|
5023882
|
1649822 |
Minona cf gemella MGPAC3 |
|
5023882
|
1649876 |
Minona cf trigonopora MCFT |
|
5023911
|
1649849 |
Minona gemella MGAT1 |
|
5023882
|
1649797 |
Minona gemella MGAT2 |
|
5023882
|
1649859 |
Minona gemella MGAT3 |
|
5023882
|
1649846 |
Minona ileanae MIILE1 |
60013
|
5023890
|
1649873 |
Minona ileanae MileanaeGB |
60013
|
5023890
|
1649866 |
Minona sp. nov. 1 MIFA1 |
|
|
1649860 |
Minona sp. nov. 1 MSPFA1 |
|
|
1649869 |
Minona sp. nov. MICAR1 |
|
|
1649832 |
Minona sp. nov. MICAR2 |
|
|
1649847 |
Minona sp. nov. MIDT1 |
|
|
1649817 |
Minona sp. nov. MIDT2 |
|
|
1649870 |
Minona sp. nov. MLAN1 |
|
|
1649841 |
Minona sp. nov. MSPCV2 |
|
|
1649865 |
Minona sp. nov. MSPCV3 |
|
|
1649788 |
Monocelis lineata COO24 |
44227
|
5023977
|
1649807 |
Monocelis lineata PLO29 |
44227
|
5023977
|
1649851 |
Monocelis lineata PPX6 |
44227
|
5023977
|
1649875 |
Monocelis lineata RDX26 |
44227
|
5023977
|
1649843 |
Monocelis longiceps MLOG4 |
44245
|
5023979
|
1649830 |
Monocelis longistyla MLOS1 |
|
5023981
|
1649836 |
Monostichoplana filum Mfilu |
99407
|
5024135
|
1649794 |
Nematoplana coelogynoporoides NCRO2 |
66743
|
5024057
|
1649815 |
Parotoplana ambrosolii PACM1 |
|
|
1649850 |
Parotoplana ambrosolii PACM2 |
|
|
1649792 |
Parotoplana ambrosolii PACM3 |
|
|
1649796 |
Parotoplana ambrosolii PTLM1 |
|
|
1649812 |
Parotoplana ambrosolii PTLM2 |
|
|
1649811 |
Parotoplana bicupa PBAT1 |
|
5024209
|
1649831 |
Parotoplana crassispina PCLM1 |
|
|
1649874 |
Parotoplana impastatoi PACTB2 |
|
|
1649867 |
Parotoplana impastatoi PACTB4 |
|
|
1649809 |
Parotoplana multispinosa PMBA1 |
|
5024222
|
1649821 |
Parotoplana primitiva PPRCE1 |
|
5024228
|
1649827 |
Parotoplana primitiva PVRO1 |
|
5024228
|
1649823 |
Parotoplana procerostyla PPBA1 |
|
5024230
|
1649863 |
Parotoplana pythagorae PPYLM1 |
|
|
1649828 |
Parotoplana renatae PRBA |
|
5024232
|
1649855 |
Parotoplana renatae PareGB |
|
5024232
|
1649834 |
Parotoplana rosignana PROLM1 |
|
|
1649848 |
Parotoplana sp. nov. 2 PPAC1 |
|
|
1649837 |
Parotoplana sp. nov. 2 PPAC2 |
|
|
1649804 |
Parotoplana sp. nov. 2 PPAC3 |
|
|
1649829 |
Parotoplana sp.nov. 1 PAPA1 |
|
|
1649864 |
Parotoplana sp.nov. 1 PAPA2 |
|
|
1649810 |
Parotoplana sp.nov. 1 PAPA3 |
|
|
1649872 |
Parotoplana spathifera PSLM1 |
|
|
1649801 |
Parotoplana tubifera PACTA2 |
|
|
1649800 |
Parotoplana tubifera PACTA3 |
|
|
1649798 |
Parotoplana tubifera PACTB3 |
|
|
1649826 |
Parotoplana tubifera PTBO1 |
|
|
1649795 |
Parotoplanella progermaria PLBA1 |
|
5024242
|
1649877 |
Polystyliphora novaehollandiae PnovaehollandiaeGB |
104920
|
5959866
|
1649791 |
Xenotoplana acus Xacus |
104915
|
5024184
|