@ARTICLE{TreeBASE2Ref23870,
author = {Dhanushka Udayanga and Lisa A Castlebury and Amy Y. Rossman and Ekachai Chukeatirote and Kevin D Hyde},
title = {The Diaporthe sojae species complex: phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops},
year = {2014},
keywords = {concave rot of melon, disease resistant soybean, genealogical concordance, Glycine max, Phomopsis, pod blight, seed decay, stem canker, soft rot of cantaloupe},
doi = {},
url = {http://},
pmid = {},
journal = {Fungal Biology},
volume = {},
number = {},
pages = {},
abstract = {Phytopathogenic species of Diaporthe are associated with the serious diseases including seed decay, pod and stem blight and stem canker of soybean leading to considerable loss of crop production worldwide. Accurate identification of the species that cause these diseases has been difficult due to the lack of a recent comprehensive phylogenetic and taxonomic revision. In this study, we revised the phylogenetic placement of the soybean seed decay and pod and stem blight pathogens, D. longicolla and D. sojae, as well as Diaporthe phaseolorum and closely related taxa. Species boundaries of the Diaporthe sojae species complex were determined based on combined phylogenetic analysis of five gene regions: partial sequences of calmodulin (CAL), beta-tubulin (TUB), histone-3 (HIS), translation elongation factor 1-α (EF1-α), and the nuclear ribosomal internal transcribed spacers (ITS). A multi-gene phylogeny inferred for available ex-type isolates of Diaporthe was used to determine the relative phylogenetic position of the D. sojae species complex with respect to other known Diaporthe species. Phylogenetic analyses revealed that this species complex is comprised of soybean pathogens as well as species associated with hosts in Apiaceae, Asteraceae, Convolvulaceae, Cucurbitaceae, Fabaceae and Solanaceae, including mostly vegetables and other herbaceous field crops and weeds. Diaporthe arctii, D. batatas, D. phaseolorum and D. sojae are epitypified and synonyms are clarified. The seed decay pathogen Diaporthe longicolla was determined to be distinct from D. sojae. Diaporthe phaseolorum associated with stem and leaf blight of Lima bean was not found to be associated with soybean in this study. In addition, Diaporthe cucurbitae, the pathogen causing black rot of cucumbers, was distinguished from D. melonis causing soft rot of cantaloupe. The taxon D. phaseolorum var. brevistylospora, causing concave rot of melon in Japan, is conspecific with D. sojae. A new species, D. ueckerae, associated with Cucumis melo from Oklahoma, is introduced with full description and illustrations.}
}
Taxa for Study 16646
Citation title:
"The Diaporthe sojae species complex: phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops".
Study name:
"The Diaporthe sojae species complex: phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops".
This study is part of submission 16646
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1658861 |
Diaporthe angelicae CBS111591 |
230357
|
3280025
|
1658844 |
Diaporthe angelicae CBS111592 |
230357
|
3280025
|
1658894 |
Diaporthe angelicae DP0488 |
230357
|
3280025
|
1658887 |
Diaporthe arctii DP0482 |
172192
|
3094164
|
1658886 |
Diaporthe batatas CBS122.21 |
|
3091149
|
1658874 |
Diaporthe convolvuli CBS124654 |
|
|
1658868 |
Diaporthe convolvuli FAU649 |
|
|
1658892 |
Diaporthe cuppatea CBS117499 |
|
|
1658856 |
Diaporthe endophytica CBS133811 |
|
|
1658850 |
Diaporthe ganjae CBS180.91 |
|
|
1658848 |
Diaporthe gulyae BRIP53158 |
|
|
1658824 |
Diaporthe gulyae BRIP54025 |
|
|
1658893 |
Diaporthe helianthi CBS592.81 |
158607
|
3915928
|
1658876 |
Diaporthe hordei CBS481.92 |
|
|
1658864 |
Diaporthe infecunda CBS133812 |
|
|
1658870 |
Diaporthe infecunda LGMF912 |
|
|
1658891 |
Diaporthe kongii YPT2011c |
|
|
1658854 |
Diaporthe longicolla ATCC60325 |
54899
|
1138688
|
1658843 |
Diaporthe longicolla CBS116023 |
54899
|
1138688
|
1658896 |
Diaporthe longicolla CBS127267 |
54899
|
1138688
|
1658859 |
Diaporthe longicolla CBS659.78 |
54899
|
1138688
|
1658883 |
Diaporthe longicolla FAU601 |
54899
|
1138688
|
1658858 |
Diaporthe longicolla FAU642 |
54899
|
1138688
|
1658846 |
Diaporthe longicolla FAU643 |
54899
|
1138688
|
1658815 |
Diaporthe longicolla FAU644 |
54899
|
1138688
|
1658830 |
Diaporthe longicolla FAU645 |
54899
|
1138688
|
1658851 |
Diaporthe longicolla FAU657 |
54899
|
1138688
|
1658888 |
Diaporthe lucitanicae CBS123212 |
|
|
1658865 |
Diaporthe lucitanicae CBS123213 |
|
|
1658897 |
Diaporthe manihotia CBS505.76 |
|
3034727
|
1658842 |
Diaporthe melonis CBS507.78 |
222581
|
3192710
|
1658873 |
Diaporthe melonis FAU626 |
222581
|
3192710
|
1658831 |
Diaporthe melonis FAU628 |
222581
|
3192710
|
1658847 |
Diaporthe melonis FAU640 |
222581
|
3192710
|
1658866 |
Diaporthe melonis FAU641 |
222581
|
3192710
|
1658834 |
Diaporthe neoarctii CBS10949 |
|
|
1658826 |
Diaporthe novem AR4855 |
|
|
1658860 |
Diaporthe novem CBS127269 |
|
|
1658820 |
Diaporthe novem CBS127270 |
|
|
1658885 |
Diaporthe novem CBS127271 |
|
|
1658849 |
Diaporthe novem DP0378 |
|
|
1658857 |
Diaporthe phaseolorum AR4203 |
36923
|
3073385
|
1658855 |
Diaporthe schini CBS133181 |
|
|
1658878 |
Diaporthe sojae Ar2 |
165439
|
3163792
|
1658822 |
Diaporthe sojae BRIP54033 |
165439
|
3163792
|
1658838 |
Diaporthe sojae CBS116019 |
165439
|
3163792
|
1658879 |
Diaporthe sojae CBS116020 |
165439
|
3163792
|
1658872 |
Diaporthe sojae DP0601 |
165439
|
3163792
|
1658867 |
Diaporthe sojae DP0605 |
165439
|
3163792
|
1658840 |
Diaporthe sojae DP0616 |
165439
|
3163792
|
1658869 |
Diaporthe sojae DP0623 |
165439
|
3163792
|
1658852 |
Diaporthe sojae FAU455 |
165439
|
3163792
|
1658837 |
Diaporthe sojae FAU456 |
165439
|
3163792
|
1658818 |
Diaporthe sojae FAU457 |
165439
|
3163792
|
1658877 |
Diaporthe sojae FAU458 |
165439
|
3163792
|
1658890 |
Diaporthe sojae FAU459 |
165439
|
3163792
|
1658839 |
Diaporthe sojae FAU499 |
165439
|
3163792
|
1658836 |
Diaporthe sojae FAU604 |
165439
|
3163792
|
1658835 |
Diaporthe sojae FAU635 |
165439
|
3163792
|
1658823 |
Diaporthe sojae FAU636 |
165439
|
3163792
|
1658884 |
Diaporthe sojae FAU637 |
165439
|
3163792
|
1658825 |
Diaporthe sojae MAFF410444 |
165439
|
3163792
|
1658863 |
Diaporthe sojae MAFF410445 |
165439
|
3163792
|
1658821 |
Diaporthe sojae PS03 |
165439
|
3163792
|
1658853 |
Diaporthe sp. CBS199.39 |
|
|
1658845 |
Diaporthe sp. CBS230.52 |
|
|
1658828 |
Diaporthe sp. FAU501 |
|
|
1658833 |
Diaporthe sp. LGMF946 |
|
|
1658816 |
Diaporthe stewartii CBS193.36 |
0
|
3164146
|
1658819 |
Diaporthe subordinaria CBS101711 |
|
|
1658841 |
Diaporthe subordinaria CBS464.90 |
|
|
1658880 |
Diaporthe tectomae CBS100547 |
|
|
1658871 |
Diaporthe terebinthifolii CBS133180 |
|
|
1658875 |
Diaporthe ueckerae CBS119639 |
|
|
1658829 |
Diaporthe ueckerae CBS136.25 |
|
|
1658889 |
Diaporthe ueckerae DOAM42078 |
|
|
1658895 |
Diaporthe ueckerae FAU656 |
|
|
1658827 |
Diaporthe ueckerae FAU658 |
|
|
1658881 |
Diaporthe ueckerae FAU659 |
|
|
1658882 |
Diaporthe ueckerae FAU660 |
|
|
1658862 |
Diaporthe ueckerae LGMF947 |
|
|
1658817 |
Diaporthe vexans CBS127.14 |
|
3169353
|
1658832 |
Diaporthe vexans FAU597 |
|
3169353
|