@ARTICLE{TreeBASE2Ref24226,
author = {Ko-Hsuan Chen and Jolanta Maria Miadlikowska and Katalin Molnar and A Elizabeth Arnold and Jana M. U'Ren and Ester Gaya and Cecile Gueidan and Francois Lutzoni},
title = {Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales},
year = {2015},
keywords = {fungal endophytes; Eurotiomycetes; lichens; Phaeomoniella; Phaeomoniellales ord. nov.; cumulative supermatrix approach},
doi = {10.1016/j.ympev.2015.01.008},
url = {http://www.sciencedirect.com/science/article/pii/S1055790315000214},
pmid = {},
journal = {Molecular Phylogentics and Evolution},
volume = {85},
number = {},
pages = {117--130},
abstract = {Symbiotic fungi living in plants as endophytes, and in lichens as endolichenic fungi, cause no apparent symptoms to their hosts. They are ubiquitous, ecologically important, hyperdiverse, and represent a rich source of secondary compounds for new pharmaceutical and biocontrol products. Due in part to the lack of visible reproductive structures and other distinctive phenotypic traits for many species, the diversity and phylogenetic affiliations of these cryptic fungi are often poorly known. The goal of this study was to determine the phylogenetic placement of representative endophytes within the Eurotiomycetes (Pezizomycotina, Ascomycota), one of the most diverse and evolutionarily dynamic fungal classes, and to use that information to infer processes of macroevolution in trophic modes. Sequences of a single locus marker spanning the nuclear ribosomal internal transcribed spacer region (nrITS) and 600 base pairs at the 5? end of the nuclear ribosomal large subunit (nrLSU) were obtained from previous studies of >6000 endophytic and endolichenic fungi from diverse biogeographic locations and hosts. We conducted phylum-wide phylogenetic searches using this marker to determine which fungal strains belonged to Eurotiomycetes and the results were used as the basis for a class-wide, seven-locus phylogenetic study focusing on endophytic and endolichenic Eurotiomycetes. Our cumulative supermatrix-based analyses revealed that representative endophytes within Eurotiomycetes are distributed in three main clades: Eurotiales, Chaetothyriales and Phaeomoniellales ord. nov., a clade that had not yet been described formally. This new order, described herein, is sister to the
2
clade including Verrucariales and Chaetothyriales. It appears to consist mainly of endophytes and plant pathogens. Morphological characters of endophytic Phaeomoniellales resemble those of the pathogenic genus Phaeomoniella. This study highlights the capacity of endophytic and endolichenic fungi to expand our understanding of the ecological modes associated with particular clades, and provides a first estimation of their phylogenetic relationships in the Eurotiomycetes.}
}
Taxa for Study 17149
Citation title:
"Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales".
Study name:
"Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales".
This study is part of submission 17149
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1795736 |
Anthracothecium australiense |
|
1426485
|
1795797 |
Arachniotus littoralis |
166392
|
3189014
|
1795744 |
Arachnomyces glareosus |
296818
|
5980547
|
1795813 |
Arachnomyces minimus |
166108
|
3189020
|
1795774 |
Arthroderma ciferrii |
78590
|
3204794
|
1795745 |
Arthroderma curreyi |
74037
|
3055864
|
1795802 |
Ascosphaera apis |
5105
|
3166592
|
1795714 |
Ascosphaera colubrina |
51569
|
5954641
|
1795771 |
Ascosphaera larvis |
51573
|
3047562
|
1795737 |
Aspergillus fumigatus |
5085
|
3295869
|
1795742 |
Aspergillus nidulans |
|
3087922
|
1795708 |
Aspergillus sp. AK0184 |
|
|
1795773 |
Aspergillus sp. AK1472 |
|
|
1795757 |
Aspergillus sp. DC474 |
|
|
1795849 |
Aspergillus sp. DC485 |
|
|
1795778 |
Aspergillus sp. NC1598 |
|
|
1795800 |
Bagliettoa baldensis |
425112
|
3039061
|
1795840 |
Byssochlamys nivea |
5093
|
3078713
|
1795852 |
Caliciopsis orientalis |
380014
|
3205492
|
1795743 |
Caliciopsis pinea |
152644
|
3124570
|
1795732 |
Capnodium coffeae |
93495
|
3072823
|
1795731 |
Capronia munkii |
|
|
1795830 |
Capronia fungicola |
43227
|
3284505
|
1795839 |
Capronia munkii |
85185
|
3261176
|
1795799 |
Capronia parasitica |
43224
|
3042953
|
1795829 |
Capronia pilosella |
45095
|
3042954
|
1795762 |
Capronia sp WUC 236 |
|
|
1795724 |
Capronia sp WUC 26 |
|
|
1795812 |
Capronia sp WUC 315 |
|
43220
|
1795803 |
Capronia sp WUC15 551 |
|
|
1795807 |
Capronia sp. AK1130 |
|
|
1795817 |
Ceramothyrium carniolicum |
134355
|
3205818
|
1795735 |
Chaenotheca furfuracea |
164575
|
3024424
|
1795805 |
Chaenotheca trichialis |
164571
|
3036651
|
1795754 |
Chaenothecopsi savonica |
|
|
1795786 |
Chaetosartorya stromatoides |
36637
|
3190929
|
1795854 |
Chaetothyriales sp Rock H5 |
|
|
1795820 |
Chaetothyriales sp Rock TRN1 |
|
|
1795772 |
Chaetothyriales sp Rock TRN107 |
|
|
1795713 |
Chaetothyriales sp Rock TRN4 |
|
|
1795806 |
Chaetothyriales sp Rock TRN475 |
|
|
1795768 |
Chaetothyriales sp TRN488 |
|
|
1795810 |
Chaetothyriales sp. Rock TRN210 |
|
|
1795703 |
Chaetothyriales sp. Rock TRN508 |
|
|
1795815 |
Chaetothyriales sp. Rock TRN515 |
|
|
1795712 |
Chaetothyriales sp1 |
|
|
1795816 |
Chaetothyriales sp2 |
|
|
1795726 |
Chaetothyriomycetidae sp Rock TRN242 |
|
|
1795764 |
Chromocleista malachitea |
68831
|
3232627
|
1795758 |
Cladophialophora boppii |
82106
|
3261256
|
1795781 |
Cladophialophora carrionii |
86049
|
3261258
|
1795793 |
Cladophialophora minourae |
166641
|
3295908
|
1795759 |
Cladophialophora modesta |
633452
|
3295909
|
1795784 |
Cladophialophora sp. AK0094 |
|
|
1795716 |
Cladophialophora sp. Rock TRN247 |
|
|
1795808 |
Cladophialophora sp. Rock TRN486 |
|
|
1795848 |
Cladophialophora sp. Rock TRN531 |
|
|
1795828 |
Coccidioides immitis |
5501
|
3264217
|
1795789 |
Coccomyces dentatus |
265080
|
2831748
|
1795738 |
Cochliobolus heterostrophus |
5016
|
3156497
|
1795824 |
Coniosporium perforans |
61460
|
3283595
|
1795741 |
Corynelia uberata |
152646
|
3133165
|
1795733 |
Ctenomyces serratus |
37239
|
3138790
|
1795836 |
Cyphellophora europaea |
|
|
1795818 |
Cyphellophora laciniata |
241713
|
3207549
|
1795838 |
Cyphellophora sp. Rock TRN214 |
|
|
1795756 |
Cyphellophora sp. Rock TRN436 |
|
|
1795709 |
Dactylospora haliotrepha |
561979
|
3192461
|
1795837 |
Dactylospora imperfecta |
561980
|
3192463
|
1795775 |
Dactylospora mangrovei |
561982
|
3294616
|
1795746 |
Dermatocarpon miniatum |
172328
|
1449172
|
1795814 |
Dolabra nepheliae |
0
|
3208132
|
1795855 |
Dothidea sambuci |
162394
|
3072183
|
1795723 |
Eremascus albus |
4968
|
3120598
|
1795747 |
Eurotiomycetes sp. FQ10867A |
|
|
1795776 |
Exophiala bergeri |
152767
|
1449566
|
1795729 |
Exophiala castellanii |
91922
|
3023843
|
1795844 |
Exophiala dermatitidis |
5970
|
3193687
|
1795760 |
Exophiala jeanselmei |
5584
|
3193688
|
1795699 |
Exophiala lecanii corni |
|
|
1795705 |
Exophiala nigra |
52866
|
3293921
|
1795755 |
Exophiala oligosperma |
215243
|
5971745
|
1795809 |
Exophiala pisciphila |
86051
|
3193691
|
1795751 |
Exophiala salmonis |
43214
|
3034908
|
1795702 |
Exophiala sp. 422 |
|
|
1795706 |
Exophiala sp. Rock TRN30 |
|
|
1795798 |
Exophiala sp. rock TRN14 |
|
|
1795785 |
Exophiala sp. rock TRN493 |
|
|
1795827 |
Exophiala xenobiotica |
348802
|
10287387
|
1795711 |
Fonsecaea monophora |
254056
|
5975952
|
1795715 |
Geoglossum nigritum |
107442
|
3076154
|
1795846 |
Granulopyrenis seawardii |
286429
|
3957254
|
1795792 |
Gymnoascus reessii |
69890
|
3036425
|
1795791 |
Hamigera avellanea |
39317
|
3194434
|
1795749 |
Histoplasma capsulatum |
5037
|
3020247
|
1795780 |
Lachnum virgineum |
47828
|
3230098
|
1795753 |
Leiothecium ellipsoideum |
633458
|
3195807
|
1795831 |
Leucothecium emdenii |
180783
|
3196211
|
1795845 |
Lindra thalassiae |
45816
|
2642509
|
1795783 |
Lulworthia grandispora |
77629
|
2642510
|
1795710 |
Monascus purpureus |
5098
|
1451217
|
1795847 |
Monilinia fructicola |
38448
|
3871600
|
1795801 |
Mycoblastus sanguinarius |
312200
|
2641745
|
1795752 |
Mycocalicium polyporaeum |
315235
|
3034839
|
1795790 |
Onygena corvina |
180788
|
3096967
|
1795750 |
Paracoccidioides brasiliensis |
121759
|
3151138
|
1795795 |
Peltula umbilicata |
169193
|
3220054
|
1795779 |
Penicillium freii |
48697
|
3234540
|
1795782 |
Penicillium javanicum |
|
3157361
|
1795835 |
Penicillium limosum |
|
3263360
|
1795707 |
Penicillium sp. 1211 |
5081
|
9730608
|
1795770 |
Penicillium sp. DC376 |
5081
|
9730608
|
1795700 |
Penicillium sp. DC509 |
5081
|
9730608
|
1795734 |
Penicillium sp. DC568 |
5081
|
9730608
|
1795720 |
Penicillium sp. NC0339 |
5081
|
9730608
|
1795811 |
Phaeococcomyces catenatus |
86052
|
3919507
|
1795730 |
Phaeomoniella chlamydospora |
65419
|
1408795
|
1795834 |
Phaeomoniella dura |
|
|
1795851 |
Phaeomoniella effusa |
|
|
1795826 |
Phaeomoniella prunicola |
|
|
1795823 |
Phaeomoniella sp. 4466 |
|
|
1795701 |
Phaeomoniella sp. AZ0963 |
|
|
1795788 |
Phaeomoniella sp. AZ1057 |
|
|
1795794 |
Phaeomoniella sp. FL0086 |
|
|
1795704 |
Phaeomoniella sp. FL0854 |
|
|
1795766 |
Phaeomoniella sp. FL1432 |
|
|
1795725 |
Phaeomoniella tardicola |
|
|
1795833 |
Phaeomoniella zymoides |
|
|
1795767 |
Placidium lacinulatum |
433971
|
3278642
|
1795722 |
Pleopsidium chlorophanum |
247144
|
3221807
|
1795765 |
Pseudotulostoma japonica |
262048
|
5976936
|
1795717 |
Pyrenula aspistea |
427130
|
3256109
|
1795822 |
Pyrenula sp |
|
|
1795804 |
Pyrgillus javanicus |
279161
|
3256279
|
1795796 |
Rhinocladiella anceps |
470084
|
3185663
|
1795740 |
Roccella fuciformis |
269074
|
3035086
|
1795777 |
Rock TRN115 |
|
|
1795763 |
Rock TRN497 |
|
|
1795721 |
Rock TRN506 |
|
|
1795787 |
Sclerococcum parmeliae |
|
3278763
|
1795748 |
Sclerococcum sphaerale |
|
3108327
|
1795821 |
Sclerophora farinacea |
188196
|
3256962
|
1795761 |
Shanorella spirotricha |
113410
|
3186384
|
1795850 |
Simonyella variegata |
92844
|
3256997
|
1795843 |
Sordaria fimicola |
27338
|
3059234
|
1795842 |
Sphinctrina turbinata |
57085
|
3142120
|
1795739 |
Spiromastix warcupii |
37235
|
3216778
|
1795727 |
Staurothele areolata |
468085
|
3257176
|
1795728 |
Stenocybe pullatula |
57082
|
3257221
|
1795853 |
Thermoascus crustaeus |
|
|
1795832 |
Trichocoma paradoxa |
76771
|
1454674
|
1795719 |
Trichoglossum hirsutum |
265104
|
3871593
|
1795718 |
Umbilicaria mammulata |
161685
|
3258444
|
1795769 |
Wahlenbergiella striatula |
468111
|
|
1795819 |
Xeromyces bisporus |
89491
|
3188067
|
1795825 |
Xylaria hypoxylon |
37992
|
3126698
|
1795841 |
Xylona heveae |
|
|