@ARTICLE{TreeBASE2Ref14616,
author = {Irina R. Arkhipova},
title = {Distribution and phylogeny of Penelope-like elements in eukaryotes},
year = {2006},
keywords = {},
doi = {10.1080/10635150601077683},
url = {},
pmid = {},
journal = {Systematic Biology},
volume = {55},
number = {},
pages = {875--885},
abstract = {Penelope-like elements (PLEs) are a relatively little studied class of eukaryotic retroelements, distinguished by the presence of the GIY-YIG endonuclease domain, the ability of some representatives to retain introns, and the similarity of PLE-encoded reverse transcriptases to telomerases. While these retrotransposons are abundant in many animal genomes, the reverse transcriptase moiety can also be found in several protists, fungi, and plants, indicating its ancient origin. A comprehensive phylogenetic analysis of PLEs was conducted, based on extended sequence alignments and a considerably expanded dataset. PLEs exhibit the pattern of evolution similar to that of non-LTR retrotransposons, which form deep-branching clades dating back to the Precambrian era. However, PLEs seem to have experienced a much higher degree of lineage losses than non-LTR retrotransposons. It is suggested that PLEs and non-LTR retrotransposons are included into a larger eTPRT (eukaryotic target-primed) group of retroelements, characterized by 5' truncation, variable target-site duplication, and the potential of the 3' end to participate in formation of non-autonomous derivatives.}
}
Taxa for Study 1732
Citation title:
"Distribution and phylogeny of Penelope-like elements in eukaryotes".
This study was previously identified under the legacy study ID S1696
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
44011 |
Cercyon ex Schistosoma japonicum |
41103
|
5174690
|
44021 |
Cercyon ex Schistosoma mansoni |
41103
|
5174690
|
44040 |
Nematis ex Caenorhabditis briggsae |
|
|
44037 |
Nematis ex Caenorhabditis remanei |
|
|
44008 |
Nematis ex Caenorhabditis sp4 |
|
|
44034 |
Nematis ex Pristionchus pacificus |
|
|
44033 |
Neptune ex Acropora palmata |
|
|
44014 |
Neptune ex Anolis carolinensis |
|
|
44030 |
Neptune ex Anolis sagrei |
|
|
44043 |
Neptune ex Fugu rubripes |
|
|
44050 |
Neptune ex Hydra magnipapillata |
|
|
44049 |
Neptune ex Nematostella vectensis |
|
|
44012 |
Neptune ex Oryzias latipes |
|
|
44042 |
Neptune ex Sphenodon punctatus |
|
|
44044 |
Neptune1 ex Danio rerio |
|
|
44017 |
Neptune1 ex Reniera sp JGI2005 |
|
|
44004 |
Neptune1 ex Xenopus tropicalis |
|
|
44028 |
Neptune2 ex Danio rerio |
|
|
44029 |
Neptune2 ex Fugu rubripes |
|
|
44035 |
Neptune2 ex Reniera sp JGI2005 |
|
|
44006 |
Neptune2 ex Xenopus tropicalis |
|
|
44003 |
Neptune3 ex Fugu rubripes |
|
|
44013 |
Neptune3 ex Xenopus tropicalis |
|
|
44025 |
Neptune4 ex Xenopus tropicalis |
|
|
44026 |
Osiris ex Penaeus monodon |
|
|
44022 |
Osiris ex Tribolium castaneum |
|
|
44024 |
OsirisB ex Aedes aegypti |
|
|
44031 |
OsirisC ex Aedes aegypti |
|
|
44047 |
OsirisD ex Aedes aegypti |
|
|
44027 |
OsirisE ex Aedes aegypti |
|
|
44016 |
PLE ex Phaeodactilum tricornutum |
|
|
44009 |
PLE ex Selaginella moellendorffii |
|
|
44010 |
Penelope ex Aedes aegypti |
|
|
44038 |
Penelope ex Bombyx mori |
|
|
44046 |
Penelope ex Drosophila virilis |
|
|
44032 |
Penelope ex Drosphila willistoni |
|
|
44041 |
Perere ex Euprymna scolopes |
|
|
44039 |
Perere ex Schmidtea mediterranea |
|
|
44036 |
Perere10 ex Schistosoma mansoni |
|
|
44018 |
Poseidon ex Anolis carolinensis |
|
|
44007 |
Poseidon ex Branchiostoma floridae |
|
|
44015 |
Poseidon ex Ciona intestinalis |
|
|
44005 |
Poseidon ex Eptatretus burgeri |
|
|
44051 |
Poseidon ex Fugu rubripes |
|
|
44002 |
Poseidon ex Hydra magnipapillata |
|
|
44020 |
Poseidon ex Oikopleura dioica |
|
|
44045 |
Poseidon ex Oryzias latipes |
|
|
44023 |
Poseidon ex Petromyzon marinus |
|
|
44019 |
Poseidon ex Strongylocentrotus purpuratus |
|
|
44048 |
Poseidon ex Xenopus tropicalis |
|
|