@ARTICLE{TreeBASE2Ref25373,
author = {Vimac Nolla-Ardevol and Miriam Peces and Marc Strous and Halina Elisabeth Tegetmeyer},
title = {Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads},
year = {2015},
keywords = {Metagenome; Metagenome comparison; Spirulina; Biogas; Binning: Microbial community},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Microbiology},
volume = {},
number = {},
pages = {},
abstract = {Background
Anaerobic digestion is a biological process in which a consortium of microorganisms transforms a complex substrate into methane and carbon dioxide. A good understanding of the interactions between the populations that form this consortium can contribute to successful anaerobic digestion of the substrate.
In this study we combine the analysis of the biogas production in a laboratory anaerobic digester fed with the microalgae Spirulina, a protein rich substrate, with the analysis of the metagenome of the consortium responsible for digestion, obtained by high-throughput DNA sequencing. The obtained metagenome was also compared with a metagenome from a full scale biogas plant fed with cellulose rich material.
Results
The optimal organic loading rate for the anaerobic digestion of Spirulina was determined to be 4.0 g Spirulina L -1 day -1 with a specific biogas production of 350 mL biogas g Spirulina -1 with a methane content of 68%.
Firmicutes dominated the microbial consortium at 38% abundance followed by Bacteroidetes, Chloroflexi and Thermotogae. Euryarchaeota represented 3.5% of the total abundance. The most abundant organism (14.9%) was related to Tissierella, a bacterium known to use proteinaceous substrates for growth. Methanomicrobiales and Methanosarcinales dominated the archaeal community. Compared to the full scale cellulose-fed digesters, Pfam domains related to protein degradation were more frequently detected and Pfam domains related to cellulose degradation were less frequent in our sample.
Conclusions
The results presented in this study suggest that Spirulina is a suitable substrate for the production of biogas. The proteinaceous substrate appeared to have a selective impact on the bacterial community that performed anaerobic digestion. A direct influence of the substrate on the selection of specific methanogenic populations was not observed.}
}
Taxa for tree 93234 of Study 18612

Citation title:
"Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads".

Study name:
"Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads".

This study is part of submission 18612
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 2139865 |
Alkaliphilus crotonoxidans |
185693
|
10203209
|
| 2139859 |
Arthrospira platensis C1 |
118562
|
3316029
|
| 2139855 |
Atopostipes suicloacalis Str.PPC79 |
180295
|
3520002
|
| 2139845 |
Bacillus subtilis |
1423
|
229777
|
| 2139844 |
Clostridium cellulolyticum |
1521
|
2554942
|
| 2139858 |
Clostridium thermocellum ATCC27405 |
1515
|
2555059
|
| 2139851 |
Clostridium ultunense Str.BS |
|
|
| 2139856 |
Firmicutes sp. EM1 |
|
|
| 2139848 |
Firmicutes sp. EM2 |
|
|
| 2139843 |
Firmicutes sp. EM3 |
|
|
| 2139837 |
Gelria glutamica |
159343
|
2555887
|
| 2139839 |
Moorella glycerini Str.JW |
|
|
| 2139857 |
Symbiobacterium thermophilum |
2734
|
2559479
|
| 2139860 |
Tepidimicrobium ferriphilum |
285106
|
5994012
|
| 2139852 |
Tissierella praeacuta Str.NCTC |
|
|
| 2139840 |
Uncultured organism AM500815 CompostingSample |
|
|
| 2139853 |
Uncultured organism CU919232 MesophilicAnaerobicDigesterMunicipalWastewaterSludge |
|
|
| 2139863 |
Uncultured organism Contig01612 assemblyC |
|
|
| 2139846 |
Uncultured organism Contig01659 assemblyA |
|
|
| 2139841 |
Uncultured organism Contig04208 assemblyC |
|
|
| 2139864 |
Uncultured organism Contig04220 assemblyC |
|
|
| 2139842 |
Uncultured organism Contig06164 assemblyB |
|
|
| 2139847 |
Uncultured organism Contig06646 assemblyC |
|
|
| 2139838 |
Uncultured organism Contig13029 assemblyB |
|
|
| 2139850 |
Uncultured organism Contig13399 assemblyB |
|
|
| 2139862 |
Uncultured organism Contig20643 assemblyA |
|
|
| 2139861 |
Uncultured organism FJ671904 BeefCattleFeedlot |
|
|
| 2139854 |
Uncultured organism GQ134033 ASBRtreatingSwineWaste |
|
|
| 2139849 |
Uncultured organism GU320654 SludgeThermophilicEnvironmentalSite |
|
|