@ARTICLE{TreeBASE2Ref26122,
author = {Maja Karaman and Eleonora Boskovic and Milana Rakic and Sasa Orlovic and Vladislava Galovic},
title = {An insight into phylogeographic variability in rDNA regions of three lignicolous fungal species. },
year = {2016},
keywords = {Fomitopsis pinicola, Polyporus varius, Hymenopellis radicata, phylogeography, population, molecular variability},
doi = {},
url = {http://},
pmid = {},
journal = {Fungal Biology},
volume = {},
number = {},
pages = {},
abstract = {Fomitopsis pinicola, Polyporus varius and Hymenopellis radicata are lignicolous fungi present in the Serbia region as well as in majority of forest ecosystems of northern hemisphere. Geographic variations in ITS1, 5.8S, ITS2 regions of these frequently occurring species were analyzed in this study. Sequences obtained from basidioms originated from different forest habitats in two distinctive parts of central Serbia (Mts Tara and Stara planina) were compared with sequences downloaded from publicly available NCBI and UNITE databases. The highest intraspecific variation within ITS1, 5.8S, ITS2 region was observed in H. radicata (5,9%) while sequences of P. varius and F. pinicola showed lower variability (3,9 and 3,4% respectively). Our results indicate that variability of ITS sequences are primarily dependent of fungal species and is generally lower within populations when compared with metapopulation variability. It was also determined that fungal species from wide geographic localities are genetically differentiated, indicating that ITS is suitable for phylogeographic investigation of the species F. pinicola, P. varius and H. radicata.}
}
Taxa for Study 19595

Citation title:
"An insight into phylogeographic variability in rDNA regions of three lignicolous fungal species. ".

Study name:
"An insight into phylogeographic variability in rDNA regions of three lignicolous fungal species. ".

This study is part of submission 19595
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
2363476 |
Fomitopsis africana |
383680
|
3282311
|
2363574 |
Fomitopsis cajanderi |
270274
|
3179049
|
2363515 |
Fomitopsis officinalis |
270279
|
3179065
|
2363565 |
Fomitopsis pinicola CHN |
|
|
2363521 |
Fomitopsis pinicola CHN2 |
40483
|
3019575
|
2363471 |
Fomitopsis pinicola CHN3 |
40483
|
3019575
|
2363508 |
Fomitopsis pinicola CHN4 |
40483
|
3019575
|
2363530 |
Fomitopsis pinicola CHN5 |
40483
|
3019575
|
2363558 |
Fomitopsis pinicola CZE |
|
|
2363469 |
Fomitopsis pinicola CZE2 |
40483
|
3019575
|
2363553 |
Fomitopsis pinicola JPN |
|
|
2363569 |
Fomitopsis pinicola LTU |
|
|
2363543 |
Fomitopsis pinicola LTU2 |
40483
|
3019575
|
2363563 |
Fomitopsis pinicola LVA |
|
|
2363546 |
Fomitopsis pinicola LVA2 |
40483
|
3019575
|
2363489 |
Fomitopsis pinicola NOR |
|
|
2363540 |
Fomitopsis pinicola NOR2 |
40483
|
3019575
|
2363490 |
Fomitopsis pinicola NOR3 |
40483
|
3019575
|
2363527 |
Fomitopsis pinicola NOR4 |
40483
|
3019575
|
2363549 |
Fomitopsis pinicola NOR5 |
40483
|
3019575
|
2363525 |
Fomitopsis pinicola RUS |
|
|
2363568 |
Fomitopsis pinicola RUS2 |
40483
|
3019575
|
2363560 |
Fomitopsis pinicola RUS3 |
40483
|
3019575
|
2363556 |
Fomitopsis pinicola RUS4 |
40483
|
3019575
|
2363518 |
Fomitopsis pinicola RUS5 |
40483
|
3019575
|
2363531 |
Fomitopsis pinicola RUS6 |
40483
|
3019575
|
2363559 |
Fomitopsis pinicola RUS7 |
40483
|
3019575
|
2363545 |
Fomitopsis pinicola RUS8 |
40483
|
3019575
|
2363516 |
Fomitopsis pinicola SWE |
|
|
2363571 |
Fomitopsis pinicola SWE2 |
40483
|
3019575
|
2363495 |
Fomitopsis pinicola StaraPl |
|
|
2363470 |
Fomitopsis pinicola Tara |
|
|
2363509 |
Fomitopsis pinicola Tara2 |
40483
|
3019575
|
2363534 |
Fomitopsis pinicola Tara3 |
40483
|
3019575
|
2363507 |
Fomitopsis pinicola Tara4 |
40483
|
3019575
|
2363478 |
Fomitopsis pinicola Tara5 |
40483
|
3019575
|
2370135 |
Ganoderma wiiroense |
|
|
2370149 |
Hymenopellis radicata AUT |
|
|
2370159 |
Hymenopellis radicata AUT2 |
|
|
2370164 |
Hymenopellis radicata CHE |
|
|
2370153 |
Hymenopellis radicata CHE2 |
|
|
2370154 |
Hymenopellis radicata FRA |
|
|
2370148 |
Hymenopellis radicata FRA2 |
|
|
2370162 |
Hymenopellis radicata RUS |
|
|
2370163 |
Hymenopellis radicata RUS10 |
|
|
2370157 |
Hymenopellis radicata RUS2 |
|
|
2370160 |
Hymenopellis radicata RUS3 |
|
|
2370147 |
Hymenopellis radicata RUS4 |
|
|
2370152 |
Hymenopellis radicata RUS5 |
|
|
2370166 |
Hymenopellis radicata RUS6 |
|
|
2370158 |
Hymenopellis radicata RUS7 |
|
|
2370168 |
Hymenopellis radicata RUS8 |
|
|
2370145 |
Hymenopellis radicata RUS9 |
|
|
2370143 |
Hymenopellis radicata SWE |
|
|
2370156 |
Hymenopellis radicata SWE2 |
|
|
2370150 |
Hymenopellis radicata SWE3 |
|
|
2370144 |
Hymenopellis radicata SWE4 |
|
|
2370169 |
Hymenopellis radicata SWE5 |
|
|
2370165 |
Hymenopellis radicata StaraPl |
|
|
2370146 |
Hymenopellis radicata StaraPl2 |
|
|
2370161 |
Hymenopellis radicata StaraPl3 |
|
|
2370155 |
Hymenopellis radicata StaraPl4 |
|
|
2370138 |
Polyporus varius EST |
|
|
2370131 |
Polyporus varius GER |
|
|
2370142 |
Polyporus varius GER2 |
40453
|
1452859
|
2370134 |
Polyporus varius RUS |
|
|
2370132 |
Polyporus varius StaraPl |
|
|
2370127 |
Polyporus varius StaraPl2 |
40453
|
1452859
|
2370139 |
Polyporus varius StaraPl3 |
40453
|
1452859
|
2370141 |
Polyporus varius StaraPl4 |
40453
|
1452859
|
2370133 |
Polyporus varius Tara |
|
|
2370136 |
Polyporus varius Tara2 |
40453
|
1452859
|
2370137 |
Polyporus varius USA |
|
|
2370130 |
Polyporus varius USA2 |
40453
|
1452859
|
2370129 |
Polyporus varius USA3 |
40453
|
1452859
|
2370128 |
Polyporus varius USA4 |
40453
|
1452859
|
2370140 |
Polyporus varius USA5 |
40453
|
1452859
|
2370167 |
Xerula australis |
170855
|
3235917
|
2370151 |
Xerula furfuracea |
71925
|
3046533
|