@ARTICLE{TreeBASE2Ref18520,
author = {Maureen A. O'Leary},
title = {Parsimony analysis of total evidence from extinct and extant taxa, and the cetacean-artiodactyl question},
year = {1999},
keywords = {},
doi = {10.1111/j.1096-0031.1999.tb00269.x},
url = {},
pmid = {},
journal = {Cladistics},
volume = {15},
number = {3},
pages = {315--330},
abstract = {Many molecule-based phylogenetic analyses find that the mammalian order Artiodactyla (even-toed ungulates) is paraphyletic unless cetaceans (whales, dolphins and porpoises) are nested within it, a hypothesis that runs contrary to traditional morphology-based ideas. Here I present a total evidence analysis of this question based on 10 extant and 27 extinct taxa, using two character data partitions: (1) skeletal data, and (2) neontological data (soft morphology, retroposons, and DNA sequences [g-fibrinogen, b-casein, and k-casein and mt cytochrome b]). A sensitivity analysis varying gap cost and transversion-transition ratio over nine parameters was implemented in the sequence alignment and in the parsimony analysis. The two data partitions are significantly incongruent, and the neontological data partition includes over six times as many characters as the osteological data partition. The osteological data partition, however, samples almost three times more taxa, taxa that cannot be sampled for neontological data because they are extinct. Osteological data resulted in artiodactyl monophyly, and neontological data in artiodactyl paraphyly over all nine parameters. In the total evidence analysis the parameter most congruent with the overall character data is unresolved as to the sister taxon of Cetacea, however the Adams consensus tree favors the neontological result. Extinction of almost 90% of the clade of interest, and particularly poor knowledge of stem taxa at the base of Artiodactyla make resolution of conflicting molecule- and morphology-based phylogenetic signals particularly difficult.}
}
Taxa for Study 10029
Citation title:
"Parsimony analysis of total evidence from extinct and extant taxa, and the cetacean-artiodactyl question".
This study was previously identified under the legacy study ID S401
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
85495 |
Byssochlamys fulva CBS 113954 |
89137
|
3155492
|
85510 |
Byssochlamys fulva CBS 132.33 |
89137
|
3155492
|
85496 |
Byssochlamys fulva CBS 135.62 |
89137
|
3155492
|
85519 |
Byssochlamys fulva CBS 146.48 |
89137
|
3155492
|
94011 |
Byssochlamys fulva CBS 604.71 |
89137
|
3155492
|
94017 |
Byssochlamys fulva CBS NRRL 32567 |
89137
|
3155492
|
94012 |
Byssochlamys fulva NRRL 32567 |
89137
|
3155492
|
85511 |
Byssochlamys lagunculariae CBS 110378 |
|
3224506
|
85508 |
Byssochlamys lagunculariae CBS 373.70 |
|
3224506
|
85525 |
Byssochlamys lagunculariae CBS 696.95 |
|
3224506
|
94015 |
Byssochlamys lagunculariae CBS CBS 373.70 |
|
3224506
|
85515 |
Byssochlamys nivea CBS 100.11 |
5093
|
3078713
|
85499 |
Byssochlamys nivea CBS 113245 |
5093
|
3078713
|
85521 |
Byssochlamys nivea CBS 133.37 |
5093
|
3078713
|
85498 |
Byssochlamys nivea CBS 271.95 |
5093
|
3078713
|
85507 |
Byssochlamys nivea CBS 604.71 |
5093
|
3078713
|
85503 |
Byssochlamys nivea CBS 606.71 |
5093
|
3078713
|
85516 |
Byssochlamys spectabilis CBS 101075 |
|
|
85509 |
Byssochlamys spectabilis CBS 102.74 |
|
|
85523 |
Byssochlamys spectabilis CBS 121581 |
|
|
85500 |
Byssochlamys spectabilis CBS 338.51 |
|
|
94013 |
Byssochlamys verrucosa |
334433
|
3190055
|
85502 |
Byssochlamys zollerniae CBS 374.70 |
|
|
94016 |
Monascus pilosus |
89488
|
1451216
|
85522 |
Paecilomyces brunneolus CBS 370.70 |
|
|
85520 |
Paecilomyces divaricatus CBS 110429 |
|
|
85505 |
Paecilomyces divaricatus CBS 284.48 |
|
|
85524 |
Paecilomyces formosus CBS 113247 |
|
|
85513 |
Paecilomyces formosus CBS 296.93 |
|
|
85512 |
Paecilomyces formosus CBS 371.70 |
|
|
85518 |
Paecilomyces formosus CBS 372.70 |
|
|
85494 |
Paecilomyces formosus CBS 628.66 |
|
|
85504 |
Paecilomyces formosus CBS 990.73B |
|
|
85517 |
Paecilomyces saturatus CBS 251.55 |
|
|
85514 |
Paecilomyces saturatus CBS 323.34 |
|
|
85501 |
Paecilomyces saturatus CBS 368.70 |
|
|
85506 |
Paecilomyces saturatus CBS 492.84 |
|
|
85497 |
Paecilomyces saturatus CBS 990.73A |
|
|
94014 |
Talaromyces byssochlamioides |
89139
|
3202882
|
4780 |
Talaromyces emersonii |
68825
|
3217122
|
1342 |
Thermoascus crustaceus |
5088
|
3217237
|