@ARTICLE{TreeBASE2Ref28197,
author = {Kamolchanok Rukseree and Kulawadee Wonganun and Prasit Palittapongarnpim and Pravech Ajawatanawong},
title = {Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand},
year = {2018},
keywords = {dictyostelids, 18S rDNA, phylogenetics, diversity},
doi = {10.5943/mycosphere/9/2/4},
url = {http://www.mycosphere.org/pdf/MYCOSPHERE_9_2_4.pdf},
pmid = {},
journal = {Mycosphere},
volume = {9},
number = {2},
pages = {202--214},
abstract = {Dictyostelids, a group of social amoebae, are one of the major eukaryotic microbes in soil. They play an important role in the turnover of nutrients and minerals and also in bacterial population control in nature. Species diversity of these microbes has been surveyed globally, but surveys in Thailand are rare. We collected 73 isolates of dictyostelids from soils in two districts of Amnat Charoen Province, Thailand. The majority of dictyostelids recovered from Amnat Charoen Province belong to the genus Dictyostelium, with 48.0%. The 5?-end of the 18S rDNA gene was amplified and sequenced using the Sanger sequencing approach. Phylogenetic trees were reconstructed using three different methods. These were neighbour-joining (NJ), maximum likelihood (ML) and Bayesian inference (BI). The resulting phylogeny suggests that five genera of dictyostelids (Cavenderia, Heterostelium, Raperostelium, Dictyostelium and Polysphondylium) were found in Amnat Charoen Province, with Dictyostelium as the dominant group. These data are the first on the phylogenetic diversity of dictyostelids in north-eastern Thailand and will be useful in the management of natural and microbial resources. }
}
Taxa for Study 22363
Citation title:
"Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand".
Study name:
"Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand".
This study is part of submission 22363
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
3072890 |
Acytostelium amazonicum HN1B1 |
|
3357008
|
3072956 |
Acytostelium singulare FDIB |
|
10358749
|
3072903 |
Cavenderia aureostipes YA6 |
|
|
3072946 |
Cavenderia deminutiva MexM19A |
|
|
3072977 |
Cavenderia exigua TNSC199 |
|
|
3072923 |
Cavenderia fasciculata SH3 |
|
|
3072973 |
Cavenderia macrocarpa MGE2 |
|
|
3072878 |
Cavenderia microspora TNSC38 |
|
|
3072897 |
Cavenderia multistipes UK26b |
|
|
3072943 |
Cavenderia sp. ACR003 |
|
|
3072908 |
Cavenderia sp. ACR004 |
|
|
3072886 |
Cavenderia sp. ACR005 |
|
|
3072971 |
Cavenderia sp. ACR020 |
|
|
3072930 |
Cavenderia sp. ACR021 |
|
|
3072932 |
Cavenderia sp. ACR022 |
|
|
3072892 |
Cavenderia sp. ACR023 |
|
|
3072919 |
Cavenderia sp. ACR024 |
|
|
3072948 |
Cavenderia sp. ACR031 |
|
|
3072872 |
Cavenderia sp. ACR032 |
|
|
3072877 |
Cavenderia sp. ACR051 |
|
|
3072954 |
Cavenderia sp. ACR052 |
|
|
3072979 |
Cavenderia sp. ACR056 |
|
|
3072889 |
Cavenderia sp. ACR059 |
|
|
3072909 |
Cavenderia sp. ACR066 |
|
|
3072904 |
Cavenderia sp. ACR068 |
|
|
3072893 |
Cavenderia sp. ACR070 |
|
|
3072950 |
Coremiostelium polycephalum B9c |
|
|
3072901 |
Coremiostelium polycephalum GUAM |
|
|
3072914 |
Coremiostelium polycephalum MY11 |
|
|
3072896 |
Coremiostelium polycephalum SS3B |
|
|
3072937 |
Dictyostelium citrinum OH494 |
361072
|
3261404
|
3072898 |
Dictyostelium discoideum 91HO9 |
44689
|
3154041
|
3072876 |
Dictyostelium mucoroides S28b |
31287
|
3108514
|
3072955 |
Dictyostelium mucoroides sweden20 |
31287
|
3108514
|
3072934 |
Dictyostelium mucoroides var stoloniferum FOII1 |
361084
|
6694876
|
3072958 |
Dictyostelium purpureum cavender |
5786
|
3108147
|
3072967 |
Dictyostelium rosarium M45 |
306026
|
3207908
|
3072875 |
Dictyostelium sp. ACR001 |
5784
|
10130567
|
3072942 |
Dictyostelium sp. ACR002 |
5784
|
10130567
|
3072915 |
Dictyostelium sp. ACR013 |
5784
|
10130567
|
3072873 |
Dictyostelium sp. ACR014 |
5784
|
10130567
|
3072941 |
Dictyostelium sp. ACR015 |
5784
|
10130567
|
3072880 |
Dictyostelium sp. ACR016 |
5784
|
10130567
|
3072911 |
Dictyostelium sp. ACR017 |
5784
|
10130567
|
3072959 |
Dictyostelium sp. ACR018 |
5784
|
10130567
|
3072926 |
Dictyostelium sp. ACR019 |
5784
|
10130567
|
3072913 |
Dictyostelium sp. ACR030 |
5784
|
10130567
|
3072983 |
Dictyostelium sp. ACR036 |
5784
|
10130567
|
3072874 |
Dictyostelium sp. ACR037 |
5784
|
10130567
|
3072912 |
Dictyostelium sp. ACR038 |
5784
|
10130567
|
3072916 |
Dictyostelium sp. ACR039 |
5784
|
10130567
|
3072881 |
Dictyostelium sp. ACR040 |
5784
|
10130567
|
3072879 |
Dictyostelium sp. ACR041 |
5784
|
10130567
|
3072929 |
Dictyostelium sp. ACR042 |
5784
|
10130567
|
3072907 |
Dictyostelium sp. ACR043 |
5784
|
10130567
|
3072883 |
Dictyostelium sp. ACR044 |
5784
|
10130567
|
3072940 |
Dictyostelium sp. ACR045 |
5784
|
10130567
|
3072938 |
Dictyostelium sp. ACR046 |
5784
|
10130567
|
3072980 |
Dictyostelium sp. ACR047 |
5784
|
10130567
|
3072894 |
Dictyostelium sp. ACR048 |
5784
|
10130567
|
3072970 |
Dictyostelium sp. ACR049 |
5784
|
10130567
|
3072953 |
Dictyostelium sp. ACR050 |
5784
|
10130567
|
3072961 |
Dictyostelium sp. ACR053 |
5784
|
10130567
|
3072982 |
Dictyostelium sp. ACR055 |
5784
|
10130567
|
3072962 |
Dictyostelium sp. ACR057 |
5784
|
10130567
|
3072978 |
Dictyostelium sp. ACR058 |
5784
|
10130567
|
3072920 |
Dictyostelium sp. ACR060 |
5784
|
10130567
|
3072899 |
Dictyostelium sp. ACR061 |
5784
|
10130567
|
3072952 |
Dictyostelium sp. ACR062 |
5784
|
10130567
|
3072939 |
Dictyostelium sp. ACR065 |
5784
|
10130567
|
3072985 |
Dictyostelium sp. ACR069 |
5784
|
10130567
|
3072935 |
Dictyostelium sp. ACR073 |
5784
|
10130567
|
3072906 |
Dictyostelium sp. Laos1 |
5784
|
10130567
|
3072888 |
Dictyostelium sp. Laos4 |
5784
|
10130567
|
3072882 |
Dictyostelium sp. Laos5 |
5784
|
10130567
|
3072921 |
Dictyostelium sp. TAS30A |
5784
|
10130567
|
3072884 |
Dictyostelium sp. TH14B |
5784
|
10130567
|
3072945 |
Dictyostelium sp. TH18B |
5784
|
10130567
|
3072957 |
Dictyostelium sp. TH1A |
5784
|
10130567
|
3072984 |
Dictyostelium sp. TH39A |
5784
|
10130567
|
3072891 |
Dictyostelium sp. THC11X |
5784
|
10130567
|
3072887 |
Hagiwaraea rhizopodium AusKY4 |
|
|
3072968 |
Heterostelium album PN500 |
|
|
3072969 |
Heterostelium asymetricum HN20C |
|
|
3072917 |
Heterostelium pallidum TNSC98 |
|
|
3072885 |
Heterostelium sp. ACR072 |
|
|
3072951 |
Polysphondylium laterosorum AE4 |
|
|
3072928 |
Polysphondylium patagonicum |
|
882406
|
3072895 |
Polysphondylium sp. ACR006 |
|
|
3072900 |
Polysphondylium sp. ACR007 |
|
|
3072910 |
Polysphondylium sp. ACR008 |
|
|
3072931 |
Polysphondylium sp. ACR009 |
|
|
3072905 |
Polysphondylium sp. ACR010 |
|
|
3072972 |
Polysphondylium sp. ACR011 |
|
|
3072927 |
Polysphondylium sp. ACR012 |
|
|
3072924 |
Polysphondylium sp. ACR025 |
|
|
3072922 |
Polysphondylium sp. ACR026 |
|
|
3072986 |
Polysphondylium sp. ACR027 |
|
|
3072963 |
Polysphondylium sp. ACR028 |
|
|
3072975 |
Polysphondylium sp. ACR029 |
|
|
3072966 |
Polysphondylium sp. ACR033 |
|
|
3072960 |
Polysphondylium sp. ACR034 |
|
|
3072981 |
Polysphondylium sp. ACR035 |
|
|
3072974 |
Polysphondylium sp. TH12A |
|
|
3072976 |
Polysphondylium violaceum |
133409
|
3078706
|
3072902 |
Polysphondylium violaceum 209 |
133409
|
3078706
|
3072918 |
Raperostelium gracile TNSC183 |
|
|
3072944 |
Raperostelium minutum |
|
|
3072949 |
Raperostelium sp. ACR054 |
|
|
3072925 |
Raperostelium sp. ACR063 |
|
|
3072933 |
Raperostelium sp. ACR064 |
|
|
3072871 |
Raperostelium sp. ACR067 |
|
|
3072936 |
Raperostelium sp. ACR071 |
|
|
3072965 |
Synstelium polycarpum OhioWILDS |
|
|
3072964 |
Synstelium polycarpum VE1b |
|
|
3072947 |
Tieghemostelium menorah M1 |
|
|