@ARTICLE{TreeBASE2Ref29084,
author = {Cassiano Aimberê Dorneles Welker and Michael R. McKain and Maria Sergeevna Vorontsova and Elizabeth A. Kellogg and Myriam Carolina Peichoto},
title = {Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae?Andropogoneae)},
year = {2019},
keywords = {},
doi = {},
url = {http://},
pmid = {},
journal = {Taxon},
volume = {},
number = {},
pages = {},
abstract = {Sugarcane (Saccharum officinarum) is one of the most important crops in the world and a major source of sugar for human consumption. Despite this immense value, the circumscription of the genus Saccharum is complex, contentious, and largely unresolved. Saccharum is either accepted in a broad sense by some authors or split into various genera such as Erianthus and Tripidium by others. A plastome phylogenomic analysis of sugarcane and relatives was performed in order to investigate generic delimitation, with emphasis on Tripidium (= Erianthus sect. Ripidium). Our plastome analysis demonstrates that Saccharum s.l. is polyphyletic and Tripidium (distributed in the Old World) belongs to a distinct lineage from Saccharum s.s. (Old World) and Erianthus s.s. (= Erianthus sect. Erianthus, New World). Therefore, this study confirms the recognition of Tripidium as a genus distinct from Saccharum and Erianthus, which is also supported by morphology and nuclear markers. The circumscription of Erianthus s.s. remains unclear since our results are consistent with either considering it as a distinct genus or including it in Saccharum. Better understanding of the evolutionary relationships of sugarcane and relatives may be useful for the selection of potential taxa for interspecific and intergeneric crosses in the genetic improvement of sugarcane. A taxonomic treatment of the six species of Tripidium is also presented, including descriptions, illustrations, data on geographical distribution, and three new nomenclatural combinations. }
}
Taxa for Study 23183
Citation title:
"Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae?Andropogoneae)".
Study name:
"Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae?Andropogoneae)".
This study is part of submission 23183
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
3489509 |
Arundinella deppeana KU291490 |
435776
|
10749097
|
3489511 |
Bothriochloa alta KU291492 |
330548
|
2661487
|
3489516 |
Chrysopogon serrulatus KU961864 |
330583
|
5829947
|
3489497 |
Coix lacryma jobi Arthan18 |
|
|
3489495 |
Eriochrysis cayennensis KU961861 |
|
|
3489512 |
Eriochrysis cf cayennensis KU961862 |
|
|
3489510 |
Eriochrysis laxa KU961863 |
|
3485890
|
3489487 |
Eriochrysis pallida TK568 |
|
5835356
|
3489501 |
Eriochrysis villosa KU961860 |
|
10753263
|
3489502 |
Eulalia aurea KU291499 |
167339
|
5864357
|
3489496 |
Eulalia aurea TK098 |
167339
|
5864357
|
3489515 |
Hyparrhenia diplanda Arthan12 |
|
|
3489505 |
Imperata cylindrica KU291466 |
80369
|
2576458
|
3489488 |
Iseilema macratherum KU291468 |
|
5840541
|
3489498 |
Miscanthus floridulus SRR486154 |
154761
|
2661803
|
3489514 |
Miscanthus sacchariflorus NC028720 |
183675
|
2668186
|
3489490 |
Miscanthus sacchariflorus SRR486747 |
183675
|
2668186
|
3489485 |
Miscanthus sinensis LC160131 |
62337
|
2661806
|
3489503 |
Miscanthus sinensis SRR559246 |
62337
|
2661806
|
3489508 |
Pogonatherum paniceum NC029881 |
167341
|
5850021
|
3489507 |
Saccharum arundinaceum NC030777 |
50346
|
2661937
|
3489492 |
Saccharum giganteum.bam |
|
|
3489499 |
Saccharum hybrid Q155 NC029221 |
|
|
3489482 |
Saccharum hybrid RB867515 KX507245 |
|
|
3489489 |
Saccharum hybrid SP 80 3280 AE009947 |
|
|
3489506 |
Saccharum hybrid SP 80 3290 NC005878 |
|
|
3489493 |
Saccharum officinarum AP006714 |
4547
|
2661940
|
3489513 |
Saccharum officinarum SRR922218 |
4547
|
2661940
|
3489491 |
Saccharum spontaneum SRR486146 |
62335
|
2661943
|
3489484 |
Sarga timorense NC023800 |
|
9530093
|
3489486 |
Sorghastrum nutans KU291482 |
79857
|
2661970
|
3489483 |
Sorghum bicolor NC008602 |
4558
|
2661974
|
3489494 |
Themeda triandra Arthan070 |
106636
|
2576516
|
3489504 |
Tripidium ravennae TK110 |
|
|
3489500 |
Zea luxurians KR873424 |
15945
|
2670585
|