@ARTICLE{TreeBASE2Ref30695,
author = {Satoshi Aoki and Motomi Ito},
title = {Where Should Wild Species be Sampled? New Method Based on Isolation-by-Distance Objectively Gives the Answer},
year = {2020},
keywords = {},
doi = {},
url = {http://},
pmid = {},
journal = {Molecular Ecology Resources},
volume = {},
number = {},
pages = {},
abstract = {Random sampling is an important statistical assumption, but virtually impossible when sampling a wild species as we cannot know where all the individuals exist. While inter-population or intra-taxa sampling methods have been developed, there are currently few intra-taxon sampling methods to objectively decide where to sample wild taxa. We suggest a new sampling method which computes appropriate sampling locations from coordinates, assuming geographical autocorrelation of phylogeny within a taxon (isolation-by-distance). The computed locations encompass the highest genetic diversity, providing a genetically representative sample. In addition, it can utilize presence/absence information during sampling to re-optimize sampling scheme. Comparing to the single existing method of the similar purpose, the merits of ours is unnecessity of environmental data resulting in easy application, and is theoretically deduced. We tested this method using published phylogeographical data. The test result was generally encouraging, but the method failed where species showed uniform genetic structure or recent distribution expansion which violate the assumption of geographical autocorrelation of phylogeny. Though simple, our method constructs a methodological and statistical foundation for sampling wild species, and is applicable to revising taxonomic study and conservation biology.}
}
Taxa for Study 24059
Citation title:
"Where Should Wild Species be Sampled? New Method Based on Isolation-by-Distance Objectively Gives the Answer".
Study name:
"Where Should Wild Species be Sampled? New Method Based on Isolation-by-Distance Objectively Gives the Answer".
This study is part of submission 24059
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4176966 |
Amanita muscaria AB080787 |
41956
|
3070378
|
4176964 |
Amanita muscaria AB080789 |
41956
|
3070378
|
4176979 |
Amanita muscaria AB080791 |
41956
|
3070378
|
4176971 |
Amanita muscaria CMP1345_EU071902 |
41956
|
3070378
|
4176980 |
Amanita muscaria CMP3143_EU071889 |
41956
|
3070378
|
4176963 |
Amanita muscaria GAL15330_DQ060891 |
41956
|
3070378
|
4176975 |
Amanita muscaria GAL15336_EU071906 |
41956
|
3070378
|
4176960 |
Amanita muscaria GAL16775_DQ060892 |
41956
|
3070378
|
4176974 |
Amanita muscaria LG382_EU071957 |
41956
|
3070378
|
4176978 |
Amanita muscaria LG882_EU071960 |
41956
|
3070378
|
4176977 |
Amanita muscaria RET145.1_EU071921 |
41956
|
3070378
|
4176970 |
Amanita muscaria RET158.7_EU071916 |
41956
|
3070378
|
4176969 |
Amanita muscaria RET271.2_EU071899 |
41956
|
3070378
|
4176959 |
Amanita muscaria RET289.3_EU071901 |
41956
|
3070378
|
4176972 |
Amanita muscaria RET303.4_EU071917 |
41956
|
3070378
|
4176961 |
Amanita muscaria RET338.9_EU071900 |
41956
|
3070378
|
4176967 |
Amanita muscaria RET383.3_EU071893 |
41956
|
3070378
|
4176962 |
Amanita muscaria var. alba AB080793 |
|
|
4176958 |
Amanita muscaria var. formosa AB080788 |
|
|
4176968 |
Amanita muscaria var. formosa AB080792 |
|
|
4176976 |
Amanita muscaria var. formosa AB080794 |
|
|
4176973 |
Amanita muscaria var. formosa AB080795 |
|
|
4176965 |
Amanita muscaria var. muscaria AB080790 |
|
|