TreeBASE Search-Trees for study 10245

@ARTICLE{TreeBASE2Ref18735, author = {Conrad Lamoraal Schoch and Pedro W. Crous and Johannes (Ewald) Zacharias Groenewald and Eric W.A. Boehm and Treena I. Burgess and Johannes de Gruyter and G. Sybren De Hoog and Linley J. Dixon and Martin Grube and C?cile Gueidan and Yukio Harada and Satoshi Hatakeyama and Kazuyuki Hirayama and Tsuyoshi Hosoya and Sabine M. Huhndorf and Kevin D Hyde and E. B. Gareth Jones and ?sa Kruys and Jan Kohlmeyer and Yan-Mei Li and Robert L?cking and H. Thorsten Lumbsch and Ludmila Marvanov? and Joelle S. Mbatchou and Audrey H. McVay and Andrew N. Miller and George K. Mugambi and Luciana Muggia and Matthew P. Nelsen and Paul Nelson and C. Alisha Owensby and Alan John Lander Phillips and Souwalak Phongpaichit and Stephen B. Pointing and Valerie Pujade-Renaud and Huzefa A. Raja and Eimy Rivas-Plata and Barbara Robbertse and Constantino Ruibal and Jariya Sakayaroj and Teruo Sano and Laura Selbmann and Carol A. Shearer and Takashi Shirouzu and Bernard Slippers and Satinee Suetrong and Kazuaki Tanaka and Brigitte Volkmann-Kohlmeyer and Michael J Wingfield and Alan R Wood and Joyce H. C. Woudenberg and Hiroaki Yonezawa and Ying Zhang and Joseph W. Spatafora}, title = {A class-wide phylogenetic assessment of Dothideomycetes}, year = {2010}, keywords = {Ascomycota, Pezizomycotina, Dothideomyceta, fungal evolution, lichens, multigene phylogeny, phylogenomics, plant pathogens, saprobes, Tree of Life}, doi = {10.3114/sim.2009.64.01}, url = {}, pmid = {}, journal = {Studies in Mycology}, volume = {64}, number = {1}, pages = {1--1510}, abstract = {We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.} }