TreeBASE Search-Trees for study 12331

@ARTICLE{TreeBASE2Ref20392, author = {Michael Gruenstaeudl and Arnoldo Santos-Guerra and Robert K Jansen}, title = {Phylogenetic analyses of Tolpis Adans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization}, year = {2012}, keywords = {adaptive radiation; hybridization; island colonization; low copy nuclear marker; Macaronesia; novel species}, doi = {10.1111/cla.12005}, url = {http://onlinelibrary.wiley.com/doi/10.1111/cla.12005/full}, pmid = {}, journal = {Cladistics}, volume = {}, number = {}, pages = {}, abstract = {The plant genus Tolpis (Asteraceae) has been the subject of several investigations on the evolution of oceanic island plants. Its insular species were utilized in studies of artificial hybrid fertility, testing the validity of Bakers law, the application of DNA barcodes, and the phylogenetic utility of inter-simple sequence repeat markers. Despite this considerable interest in Tolpis, little is known about its phylogenetic history. Past investigations were unable to resolve most of the interspecific relationships, especially within the Canary Islands, where the genus is particularly diverse. Incomplete taxon sampling, the use of ambiguous outgroups and the limited utility of slowly evolving chloroplast DNA markers precluded detailed reconstructions. The present investigation presents a comprehensive molecular phylogeny of Tolpis. By utilizing highly variable nuclear DNA markers and a comprehensive taxon set, we have resolved the majority of interspecific relationships in the genus. Evaluations of competing tree topologies and ancestral area reconstructions complemented the analyses. Our results highlight the presence of three dominant mechanisms of island plant evolution?island colonization, adaptive radiation and interspecific hybridization?in Tolpis: (i) the extant distribution of the genus is the result of two independent colonization pathways, (ii) Tolpis has colonized at least one archipelago multiple times, (iii) the present insular diversity is the product of adaptive radiation, (iv) potential hybridization was detected between species now inhabiting different islands and archipelagoes, indicating sympatric historical distributions, and (v) several undescribed species await taxonomic recognition.} }

Delicious

Connotea

Trees for Study 12331

Citation title: "Phylogenetic analyses of Tolpis Adans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization".

Study name: "Phylogenetic analyses of Tolpis Adans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization".

This study is part of submission 12331 (Status: Published).

Trees

ID	Tree Label	Tree Title	Tree Type	Tree Kind	Taxa
Tr51195	B12 75% consensus tree: Figure 4b, Table 2	B12 75% consensus tree of all phylogenetic analyses	Consensus	Gene Tree	View Taxa
Tr51199	ETS 75% consensus tree: Figure 5, Table 2	ETS 75% consensus tree of all phylogenetic analyses	Consensus	Gene Tree	View Taxa
Tr51193	B12 Best ML tree with indels: Table 2	B12 Maximum likelihood tree with the highest likelihood score including indel coding	Single	Gene Tree	View Taxa
Tr51198	ETS Bayesian consensus tree without indels: Table 2	ETS Majority rule consensus tree of all retained Markov chain topologies disregarding indels	Consensus	Gene Tree	View Taxa
Tr51189	B12 MP consensus tree without indels: Table 2	B12 Majority rule consensus tree of all equally most parsimonious trees disregarding indels	Consensus	Gene Tree	View Taxa
Tr51190	B12 Best ML tree without indels: Table 2	B12 Maximum likelihood tree with the highest likelihood score disregarding indels	Single	Gene Tree	View Taxa
Tr51186	A19 Best ML tree with indels: Table 2	A19 Maximum likelihood tree with the highest likelihood score including indel coding	Single	Gene Tree	View Taxa
Tr51183	A19 Best ML tree without indels: Table 2	A19 Maximum likelihood tree with the highest likelihood score disregarding indels	Single	Gene Tree	View Taxa
Tr51194	B12 Bayesian consensus tree with indels: Table 2	B12 Majority rule consensus tree of all retained Markov chain topologies including indel coding	Consensus	Gene Tree	View Taxa
Tr51197	ETS Best ML tree without indels: Table 2	ETS Maximum likelihood tree with the highest likelihood score disregarding indels	Single	Gene Tree	View Taxa
Tr51188	A19 75% consensus tree: Figure 4a, Table 2	A19 75% consensus tree of all phylogenetic analyses	Consensus	Gene Tree	View Taxa
Tr51192	B12 MP consensus tree with indels: Table 2	B12 Majority rule consensus tree of all equally most parsimonious trees including indel coding	Consensus	Gene Tree	View Taxa
Tr51187	A19 Bayesian consensus tree with indels: Table 2	A19 Majority rule consensus tree of all retained Markov chain topologies including indel coding	Consensus	Gene Tree	View Taxa
Tr51196	ETS MP consensus tree without indels: Table 2	ETS Majority rule consensus tree of all equally most parsimonious trees disregarding indels	Consensus	Gene Tree	View Taxa
Tr51182	A19 MP consensus tree without indels: Table 2	A19 Majority rule consensus tree of all equally most parsimonious trees disregarding indels	Consensus	Gene Tree	View Taxa
Tr51185	A19 MP consensus tree with indels: Table 2	A19 Majority rule consensus tree of all equally most parsimonious trees including indel coding	Consensus	Gene Tree	View Taxa
Tr51184	A19 Bayesian consensus tree without indels: Table 2	A19 Majority rule consensus tree of all retained Markov chain topologies disregarding indels	Consensus	Gene Tree	View Taxa
Tr51191	B12 Bayesian consensus tree without indels: Table 2	B12 Majority rule consensus tree of all retained Markov chain topologies disregarding indels	Consensus	Gene Tree	View Taxa