org.hibernate.exception.GenericJDBCException: could not initialize a collection: [org.cipres.treebase.domain.study.Analysis.analysisSteps#97]
at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103)
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
at org.hibernate.loader.Loader.loadCollection(Loader.java:2001)
at org.hibernate.loader.collection.BatchingCollectionInitializer.initialize(BatchingCollectionInitializer.java:52)
at org.hibernate.persister.collection.AbstractCollectionPersister.initialize(AbstractCollectionPersister.java:565)
at org.hibernate.event.def.DefaultInitializeCollectionEventListener.onInitializeCollection(DefaultInitializeCollectionEventListener.java:63)
at org.hibernate.impl.SessionImpl.initializeCollection(SessionImpl.java:1716)
at org.hibernate.collection.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:344)
at org.hibernate.collection.AbstractPersistentCollection.read(AbstractPersistentCollection.java:86)
at org.hibernate.collection.PersistentList.iterator(PersistentList.java:115)
at java.util.Collections$UnmodifiableCollection$1.(Collections.java:1041)
at java.util.Collections$UnmodifiableCollection.iterator(Collections.java:1040)
at org.cipres.treebase.service.tree.PhyloTreeServiceImpl.findByStudy(PhyloTreeServiceImpl.java:173)
at sun.reflect.GeneratedMethodAccessor377.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:304)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
at com.sun.proxy.$Proxy88.findByStudy(Unknown Source)
at org.cipres.treebase.web.controllers.SearchSummaryController.showForm(SearchSummaryController.java:319)
at org.springframework.web.servlet.mvc.AbstractFormController.showNewForm(AbstractFormController.java:338)
at org.springframework.web.servlet.mvc.AbstractFormController.handleRequestInternal(AbstractFormController.java:278)
at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153)
at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:858)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:792)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:476)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:431)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:489)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:583)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:239)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:215)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164)
at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141)
at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90)
at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.displaytag.filter.ResponseOverrideFilter.doFilter(ResponseOverrideFilter.java:125)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:75)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119)
at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:264)
at org.acegisecurity.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:107)
at org.acegisecurity.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:72)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.ui.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:110)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.wrapper.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:81)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java:217)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.context.HttpSessionContextIntegrationFilter.doFilter(HttpSessionContextIntegrationFilter.java:191)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.util.FilterChainProxy.doFilter(FilterChainProxy.java:148)
at org.acegisecurity.util.FilterToBeanProxy.doFilter(FilterToBeanProxy.java:90)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:199)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:168)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:483)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:679)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:617)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:934)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1698)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52)
at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:750)
Caused by: org.postgresql.util.PSQLException: This statement has been closed.
at org.postgresql.jdbc.PgStatement.checkClosed(PgStatement.java:742)
at org.postgresql.jdbc.PgStatement.getMaxRows(PgStatement.java:546)
at org.postgresql.jdbc.PgStatement.createResultSet(PgStatement.java:171)
at org.postgresql.jdbc.PgStatement$StatementResultHandler.handleResultRows(PgStatement.java:222)
at org.postgresql.core.ResultHandlerDelegate.handleResultRows(ResultHandlerDelegate.java:31)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleResultRows(QueryExecutorImpl.java:612)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2307)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190)
at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134)
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106)
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106)
at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:186)
at org.hibernate.loader.Loader.getResultSet(Loader.java:1787)
at org.hibernate.loader.Loader.doQuery(Loader.java:674)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:236)
at org.hibernate.loader.Loader.loadCollection(Loader.java:1994)
... 93 more
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