TreeBASE Search-Trees for study 22449

@ARTICLE{TreeBASE2Ref28261, author = {Sandra Isabel Rodrigues Videira and Johannes (Ewald) Zacharias Groenewald and Uwe Braun and Hyeon-Dong Shin and Pedro W. Crous}, title = {All that glitters is not Ramularia}, year = {2016}, keywords = {Barcoding, Cercosporoid, Multilocus phylogeny, Mycosphaerella, Plant pathogen}, doi = {10.1016/j.simyco.2016.06.001}, url = {http://dx.doi.org/10.1016/j.simyco.2016.06.001}, pmid = {}, journal = {Studies in Mycology}, volume = {83}, number = {}, pages = {49--163}, abstract = {Ramularia is a species-rich genus that harbours plant pathogens responsible for yield losses to many important crops, including barley, sugar beet and strawberry. Species of Ramularia are hyphomycetes with hyaline conidiophores and conidia with distinct, thickened, darkened, refractive conidiogenous loci and conidial hila, and Mycosphaerella sexual morphs. Because of its simple morphology and general lack of DNA data in public databases, several allied genera are frequently confused with Ramularia. In order to improve the delimitation of Ramularia from allied genera and the circumscription of species within the genus Ramularia, a polyphasic approach based on multilocus DNA sequences, morphological and cultural data were used in this study. A total of 420 isolates belonging to Ramularia and allied genera were targeted for the amplification and sequencing of six partial genes. Although Ramularia and Ramulariopsis proved to be monophyletic, Cercosporella and Pseudocercosporella were polyphyletic. Phacellium isolates clustered within the Ramularia clade and the genus is thus tentatively reduced to synonymy under Ramularia. Cercosporella and Pseudocercosporella isolates that were not congeneric with the ex-type strains of the type species of those genera were assigned to existing genera or to the newly introduced genera Teratoramularia and Xenoramularia, respectively. Teratoramularia is a genus with ramularia-like morphology belonging to the Teratosphaeriaceae, and Xenoramularia was introduced to accommodate hyphomycetous species closely related to Zymoseptoria. The genera Apseudocercosporella, Epicoleosporium, Filiella, Fusidiella, Neopseudocercosporella, and Mycosphaerelloides were also newly introduced to accommodate species noncongeneric with their purported types. A total of nine new combinations and 24 new species were introduced in this study. } }

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Trees for Study 22449

Citation title: "All that glitters is not Ramularia".

Study name: "All that glitters is not Ramularia".

This study is part of submission 22449 (Status: Published).

Trees

ID	Tree Label	Tree Title	Taxa
Tr110590	Fig. 2 Unpublished first of 1000 equally most parsimonious trees	Tr110590	View Taxa
Tr110591	Fig. 2 Unpublished RAxML tree	Tr110591	View Taxa
Tr110597	Unpublished his3 NJ phylogeny	Tr110597	View Taxa
Tr110594	Unpublished actA NJ phylogeny based on Fig. 2 alignment	Tr110594	View Taxa
Tr110596	Unpublished tef1 NJ phylogeny based on Fig. 2 alignment	Tr110596	View Taxa
Tr110589	Fig. 2 Baysian tree	Tr110589	View Taxa
Tr110595	Unpublished gapdh NJ phylogeny based on Fig. 2 alignment	Tr110595	View Taxa
Tr110588	Fig. 1 Unpublished RAxML tree	Tr110588	View Taxa
Tr110587	Fig. 1 Unpublished first of 1000 equally most parsimonious trees	Tr110587	View Taxa
Tr110592	Unpublished rpb2 NJ phylogeny based on Fig. 2 alignment	Tr110592	View Taxa
Tr110593	Unpublished ITS NJ phylogeny based on Fig. 2 alignment	Tr110593	View Taxa
Tr110586	Fig. 1 Bayesian tree	Tr110586	View Taxa