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Authors Year Title Journal/Publisher
S10012 Ward P., Brady S., Fisher B. , et al. 2010 Phylogeny and biogeography of dolichoderine ants: effects of data partitioning and relict taxa on historical inference. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10036 Townsend T., Vieites D., Glaw F. , et al. 2009 Testing Species-Level Diversification Hypotheses in Madagascar: The Case of Microendemic Brookesia Leaf Chameleons Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1004 Jordan S., Simon C., Polhemus D. 2003 Molecular systematics and adaptive radiation of Hawaii's endemic damselfly genus Megalagrion (Odonata: Coenagrionidae). Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10045 Baker W.J., Savolainen V., Asmussen-lange C. , et al. 2009 Complete Generic Level Phylogenetic Analyses of Palms (Arecaceae) with Comparisons of Supertree and Supermatrix Approaches Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10063 San mauro D., Gower D., Massingham T. , et al. 2009 Experimental design in caecilian systematics: phylogenetic information of mitochondrial genomes and nuclear rag1 Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10081 Fröbisch N., Schoch R. 2009 Testing the Impact of Miniaturization on Phylogeny: Paleozoic Dissorophoid Amphibians Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10096 Leclere L., Schuchert P., Cruaud C. , et al. 2009 Molecular Phylogenetics of Thecata (Hydrozoa, Cnidaria) Reveals Long-Term Maintenance of Life History Traits Despite High Frequency of Recent Character Changes Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10116 Leaché A. 2009 Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10124 Steeman M., Hebsgaard M., Fordyce R. , et al. 2009 Radiation of Extant Cetaceans Driven by Restructuring of the Oceans Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10130 Hansen D., Spicer G., Patterson R. 2009 Phylogenetic Relationships between and within Phacelia Sections Whitlavia and Gymnobythus (Boraginaceae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10131 Pirie M., Humphreys A., Barker N. , et al. 2009 Reticulation, data combination and inferring evolutionary history: an example from Danthonioideae Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10145 Salvo G., Ho S., Rosenbaum G. , et al. 2010 Tracing the Temporal and Spatial Origins of Island Endemics in the Mediterranean Region: A Case Study from the Citrus Family (Ruta L., Rutaceae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10155 Duno de stefano R., Carnevali fernández-concha G., Lorena can-itza L. , et al. 2010 The Morphological and Phylogenetic Distinctions of Coursetia greenmanii (Leguminosae): Taxonomic and Ecological Implications. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10160 Thomson R.C., Shaffer H. 2010 Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10163 Marshall D. 2010 Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10165 Brown R., Yang Z. 2010 Bayesian Dating of Shallow Phylogenies with a Relaxed Clock Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10167 Klopfstein S., Kropf C., Quicke D. 2010 An Evaluation of Phylogenetic Informativeness Profiles and the Molecular Phylogeny of Diplazontinae (Hymenoptera, Ichneumonidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10171 Stern A., Mayrose I., Penn O. , et al. 2010 An Evolutionary Analysis of Lateral Gene Transfer in Thymidylate Synthase Enzymes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10178 Ross K., Gotzek D., Ascunce M. , et al. 2010 Species delimitation: A case study in a problematic ant taxon. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10184 Phillips M., Gibb G., Crimp E. , et al. 2010 Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1019 Susko E., Field C., Blouin C. , et al. 2003 Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10200 Waters J., Rowe D., Burridge C. , et al. 2010 Gene trees versus species trees: reassessing life-history evolution in a freshwater fish radiation. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1021 Yang Z., Yoder A.D. 2003 Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10249 Holland B., Spencer H., Worthy T. , et al. 2010 Identifying cliques of convergent characters: concerted evolution in the cormorants and shags. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10254 Smith S., Donoghue M.J. 2010 Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10268 Carstens B., Dewey T. 2010 Species delimitation using a combined coalescent and information theoretic approach: An example from North American Myotis bats. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10274 Magallón S. 2010 Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10282 Stern S., Bohs L., Weese T. 2010 A three-gene evolutionary study of Solanum section Androceras. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10315 Cerchio S., Tucker P. 1998 Influence of Alignment on the mtDNA Phylogeny of Cetacea: Questionable Support for a Mysticeti/Physeteroidea Clade Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10493 Biffin E., Hill R., Andrew L.J. 2010 Did Kauri (Agathis: Araucariaceae) Really Survive the Oligocene Drowning of New Zealand? Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10562 Parfrey L.W., Grant J.R., Tekle Y.I. , et al. 2010 Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10570 Reeves P.A., Richards C.M. 2011 Species Delimitation under the General Lineage Concept: An Empirical Example Using Wild North American Hops (Cannabaceae: Humulus lupulus) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10580 Buerki S., Forest F., Salamin N. , et al. 2010 Comparative Performance of Supertree Algorithms in Large Datasets using the Soapberry Family (Sapindaceae) as a case study Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10613 Nagy L., Walther G., Házi J. , et al. 2010 Understanding the Evolutionary Processes of Fungal Fruiting Bodies: Correlated Evolution and Divergence Times in the Psathyrellaceae Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10620 Skinner A. 2010 Rate Heterogeneity, Ancestral Character State Reconstruction, and the Evolution of Limb Morphology in Lerista (Scincidae, Squamata) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10632 Egan A.N., Doyle J. 2010 A Comparison of Global, Gene-Specific, and Relaxed Clock Methods in a Comparative Genomics Framework: Dating the Polyploid History of Soybean (Glycine max) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1065 Waters J., Roy M. 2004 Out of Africa: the slow train to Australasia. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1070 Nylander J., Ronquist F., Huelsenbeck J. , et al. 2004 Bayesian Phylogenetic Analysis of Combined Data. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1073 Percy D., Cronk Q., Page R. 2004 Plant-insect interactions: double-dating associated insect and plant lineages reveals asynchronous radiations. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10754 Fink S., Fischer M.C., Excoffier L. , et al. 2010 Genomic Scans Support Repetitive Continental Colonization Events during the Rapid Radiation of Voles (Rodentia: Microtus): the Utility of AFLPs versus Mitochondrial and Nuclear Sequence Markers Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10869 Rowe K.C. 2011 Recent and Rapid Speciation with limited Morphological Disparity in the Genus Rattus Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10901 Yu L., Luan P., Jin W. , et al. 2010 Phylogenetic Utility of Nuclear Introns in Interfamilial Relationships of Caniformia (Order Carnivora). Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10908 Wiens J.J., Kuczynski C.A., Townsend T. , et al. 2010 Combining phylogenomics and fossils in higher level squamate reptile phylogeny: molecular data change the placement of fossil taxa. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10968 Han K., Braun E., Kimball R. , et al. 2010 Are Transposable Element Insertions Homoplasy Free? An Examination Using the Avian Tree of Life Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11103 Unmack P.J., Hammer M., Adams M. , et al. 2011 A Phylogenetic Analysis of Pygmy Perches (Teleostei: Percichthyidae) with an Assessment of the Major Historical Influences on Aquatic Biogeography in Southern Australia Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11114 Pyron R.A. 2011 Divergence-Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11132 Schnitzler J., Barraclough T., Boatwright J. , et al. 2011 Causes of Plant Diversification in the Cape Biodiversity Hotspot of South Africa Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1115 Lin C., Danforth B., Wood T. 2004 Molecular phylogenetics and evolution of maternal care in membracine treehoppers. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11161 Antonelli A., Sanmartín I. 2011 Mass Extinction, Gradual Cooling, or Rapid Radiation? Reconstructing the Spatiotemporal Evolution of the ancient angiosperm genus Hedyosmum (Chloranthaceae) using Empirical and simulated Approaches Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11167 Goldberg E.E., Lancaster L.T., Ree R.H. 2011 Phylogenetic inference of reciprocal effects between geographic range evolution and diversification Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11174 Kubatko L., Gibbs H.L., Bloomquist E.W. 2011 Inferring Species-Level Phylogenies and Taxonomic Distinctiveness Using Multi-Locus Data In Sistrurus Rattlesnakes Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11235 Jondelius U., Wallberg A., Hooge M. , et al. 2011 How the Worm Got its Pharynx: Phylogeny, Classification and Bayesian assessment of Character Evolution in Acoela Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11258 Syme A.E., Oakley T.H. 2011 Dispersal between shallow and abyssal seas and evolutionary loss and re-gain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11289 Harrington R.C., Near T.J. 2011 Phylogenetic and coalescent methods of species delimitation in snubnose darters (Percidae: Etheostoma) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11291 Lukoschek V., Avise J.C., Keogh J.S. 2011 Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11299 Cho S., Zwick A., Regier J. , et al. 2011 Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1134 Razafimandimbison S., Kellogg E., Bremer B. 2004 Recent Origin and Phylogenetic Utility of Divergent ITS Putative Pseudogenes: A Case Study from Naucleeae (Rubiaceae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11362 Badets M., Whittington I., Lalubin F. , et al. 2011 Correlating Early Evolution of Parasitic Platyhelminths to Gondwana Break-up Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1137 Steppan S., Adkins R., Anderson J. 2004 Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11410 Tsang L., Chan T., Ahyong S. , et al. 2011 Hermit to king, or hermit to all: Multiple transitions to crab-like forms from hermit crab ancestors Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11415 Zhou X., Xu S., Xu J. , et al. 2011 Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11475 Ronquist F., Klopfstein S., Lars V. , et al. 2012 A Total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11548 Near T.J., Bossu C., Bradburd G.S. , et al. 2011 Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11625 San mauro D., Gower D., Cotton J. , et al. 2012 Experimental design in phylogenetics: testing predictions from expected information Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11662 Melo-ferreira J., Boursot P., Carneiro M. , et al. 2011 Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) revealed by Species-tree Inference and Coalescent Simulations Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11672 Miyamoto M.M., Porter C.A., Goodman M. 2000 c-Myc Gene Sequences and the Phylogeny of Bats and Other Eutherian Mammals. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11849 Lee J.Y., Joseph L., Edwards S. 2011 A Species Tree for the Australo-Papuan Fairy-wrens and Allies (Aves: Maluridae) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11925 Camargo A., Avila L.J., Morando M. , et al. 2012 Accuracy and precision of species trees: effects of locus, individual, and base pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11986 Moyle R.G., Andersen M.J., Oliveros C. , et al. 2012 Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12013 Kjer K. 2004 Aligned 18S and Insect Phylogeny. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12086 Smith U.E., Hendricks J.R. 2013 Geometric Morphometric Character Suites as Phylogenetic Data: Extracting Phylogenetic Signal from Gastropod Shells Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12087 Klimov P.B., Oconnor B. 2011 Is Permanent Parasitism Reversible?—Critical Evidence from Early Evolution of House Dust Mites. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12156 Faircloth B.C., Mccormack J.E., Crawford N.G. , et al. 2011 Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12162 Fouquet A., Noonan B.P., Rodrigues M.T. , et al. 2012 Multiple Quaternary Refugia in the Eastern Guiana Shield Revealed by Comparative Phylogeography of 12 Frog Species Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12169 Mariadassou M., Bar-hen A., Kishino H. 2012 Taxon Influence Index: Assessing Taxon-Induced Incongruities in Phylogenetic Inference Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12213 Tavares E.S., Baker A., Pereira S. 2006 Phylogenetic Relationships and Historical Biogeography of Neotropical Parrots (Psittaciformes: Psittacidae: Arini) Inferred from Mitochondrial and Nuclear DNA Sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12261 Cusimano N., Stadler T., Renner S.S. 2012 A new method for handling missing species in diversification analysis applicable to randomly or non-randomly sampled phylogenies Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12267 Heibl C., Renner S.S. 2012 Distribution models and a dated phylogeny for Chilean Oxalis species reveal occupation of new habitats by different lineages, not rapid adaptive radiation Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12303 Schenk J.J., Rowe K.C., Steppan S.J. 2013 Ecological Opportunity and Incumbency in the Diversification of Repeated Continental Colonizations by Muroid Rodents Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12439 Woodhams M., Steane D., Jones R.C. , et al. 2012 Novel distances for Dollo data Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1251 Schneeweiss G., Schoenswetter P., Kelso S. , et al. 2004 Complex Biogeographic Patterns in Androsace (Primulaceae) and Related Genera: Evidence from Phylogenetic Analyses of Nuclear Internal Transcribed Spacer and Plastid trnL-F Sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1252 Townsend T., Larson A., Louis E. , et al. 2004 Molecular phylogentics of Squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12669 Lemmon A.R., Lemmon E., Emme S. 2012 Anchored hybrid enrichment for massively high-throughput phylogenomics Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12836 Sauquet H., Ho S.Y., Gandolfo M.A. , et al. 2012 Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1287 Pisani D. 2004 Identifying and Removing Fast Evolving Sites Using Compatibility Analysis: An Example from the Arthropoda Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12889 Wainwright P.C., Smith W.L., Price S.A. , et al. 2012 The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12891 Smith J.V., Braun E., Kimball R. 2012 Ratite Non-Monophyly: Independent Evidence From 40 Novel Loci Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1317 Weisrock D., Harmon L., Larson A. 2005 Resolving Deep Phylogenetic Relationships in Salamanders: Analyses of Mitochondrial and Nuclear Genomic Data. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1330 Gaubert P., Wozencraft W., Cordeiro-estrela P. , et al. 2005 Mosaics of Convergences, Noise and Misleading Morphological Phylogenies: what's in a Viverrid-like Carnivoran? Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13315 Cruaud A., Rřnsted N., Chantarasuwan B. , et al. 2012 An Extreme Case of Plant-Insect Co-Diversification: Figs and Fig-Pollinating Wasps Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1332 Kennedy M., Holland B., Gray R. , et al. 2005 Untangling long branches: Identifying conflicting phylogenetic signals using spectral analysis, Neighbor-Net, and consensus networks. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1349 Wortley A., Rudall P., Harris D. , et al. 2005 How Much Data are Needed to Resolve a Difficult Phylogeny? Case Study in Lamiales. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13703 Lang A.S., Stech M. 2013 What’s in a Name? Disentangling the Dicranum scoparium Species Complex (Dicranaceae, Bryophyta) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1372 Poux C., Madsen O., Marquard E. , et al. 2005 Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores and rodents as inferred from nuclear genes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13808 Guschanski K., Krause J., Sawyer S. , et al. 2013 Next-Generation Museomics Disentangles One of the Largest Primate Radiations. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13927 Bergsten J., Nilsson A.N., Ronquist F. 2013 Bayesian Tests of Topology Hypotheses with an example from Diving Beetles Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13957 Hamilton C.A., Hendrixson B., Brewer M.S. , et al. 2013 An Integrative Approach to Delimiting Species Using Multiple DNA Barcoding Methods: A Case Study of the North American Tarantula Genus Aphonopelma (Araneae, Mygalomorphae, Theraphosidae) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13970 Davalos L.M., Velazco P.M., Warsi O. , et al. 2014 Integrating Incomplete Fossils by Isolating Conflicting Signal in Saturated and Non-Independent Morphological Characters Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14119 Satler J.D., Carstens B.C., Hedin M.C. 2013 Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (Mygalomorphae, Antrodiaetidae, Aliatypus) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1413 Creer S., Pook C., Malhotra A. , et al. 2006 Optimal Intron Analyses in the Trimeresurus Radiation of Asian Pitvipers. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14188 Bossuyt F., Brown R., Hillis D.M. , et al. 2006 Phylogeny and Biogeography of a Cosmopolitan Frog Radiation: Late Cretaceous Diversification Resulted in Continent-Scale Endemism in the Family Ranidae. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14194 Rothfels C., Schuettpelz E. 2013 Accelerated Rate of Molecular Evolution for Vittarioid Ferns is Strong and Not Due to Selection Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1422 Struck T., Purschke G., Halanych K. 2006 Phylogeny of Eunicida (Annelida) and Exploring Data Congruence using a Partition Addition Bootstrap Alteration (PABA) Approach. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14254 Pearson T., Hornstra H.M., Sahl J.W. , et al. 2013 When Outgroups Fail; Phylogenomics of Rooting the Emerging Pathogen, Coxiella burnetii Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14273 Betancur-r. R., Li C., Orti G. 2013 Addressing Gene Tree Discordance and Non-Stationarity to resolve a Multi-Locus Phylogeny of the Flatfishes (Teleostei: Pleuronectiformes) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14354 Ruane S., Bryson R., Pyron R.A. , et al. 2013 Coalescent Species Delimitation in Milksnakes (genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1448 Collins A., Schuchert P., Marques A. , et al. 2005 Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1450 Jansa S., Barker F., Heaney L. 2006 The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1452 Lartillot N., Philippe H. 2006 Computing Bayes Factors Using Thermodynamic Integration. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14522 Grummer J.A., Bryson R., Reeder T.W. 2013 Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1453 Poux C., Chevret P., Huchon D. , et al. 2006 Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1464 Rüber L., Britz R., Zardoya R. 2006 Molecular phylogenetics and evolutionary diversification of labyrinth fishes (Perciformes; Anabantoidei) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1470 Huyse T., Volckaert F. 2005 Comparing Host and Parasite Phylogenies: Gyrodactylus Flatworms Jumping from Goby to Goby. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1486 Brinkmann H., Giezen M., Zhou Y. , et al. 2005 An empirical Assessment of Long Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1490 Althoff D., Segraves K., Leebens-mack J. , et al. 2006 Patterns of speciation in the yucca moths: parallel species radiations within the Tegeticula yuccasella species complex. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14995 Galian J.A., Rosato M., Rossello J.A. 2013 Partial Sequence Homogenization in the 5S Multigene Families May Generate Sequence Chimeras and Spurious Results in Phylogenetic Reconstructions Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1500 Joly S., Bruneau A. 2006 Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: an Example from Rosa in North America. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1505 Schuettpelz E., Pryer K. 2006 Reconciling extreme branch length differences: decoupling time and rate through the evolutionary history of filmy ferns. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1512 Mueller J., Reisz R. 2006 The phylogeny of early eureptiles: comparing parsimony and Bayesian approaches in the investigation of a basal fossil clade. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1516 Asher R., Hofreiter M. 2005 Tenrec Phylogeny and the Noninvasive Extraction of Nuclear DNA Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1533 Buschbom J., Barker D. 2006 Evolutionary History of Vegetative Reproduction in Porpidia s.l. (Lichen-forming Ascomycota) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15349 Magallón S. 2010 Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15464 Adams M., Raadik T.A., Burridge C.P. , et al. 2014 Global biodiversity assessment and hyper-cryptic species complexes: more than one species of elephant in the room? Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1548 Won H., Renner S.S. 2006 Dating Dispersal and Radiation in the Gymnosperm Gnetum (Gnetales) ŔÜ clock calibration when outgroup relationships are uncertain. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15531 Kozak K.M., Wahlberg N., Neild A. , et al. 2014 Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1572 Wahlberg N. 2006 That Awkward Age for Butterflies: Insights from the Age of the Butterfly Subfamily Nymphalinae (Lepidoptera: Nymphalidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1577 Tavares E.S., Baker A., Pereira S. , et al. 2006 Phylogenetic Relationships and Historical Biogeography of Neotropical Parrots (Psittaciformes: Psittacidae: Arini) Inferred from Mitochondrial and Nuclear DNA Sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1591 Syring J., Farrell K., Businsky R. , et al. 2007 Widespread Genealogical Nonmonophyly in Species of Pinus Subgenus Strobus. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16016 Toussaint E.F., Condamine F., Hawlitschek O. , et al. 2014 Unveiling the Diversification Dynamics of Australasian Predaceous Diving Beetles in the Cenozoic Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16060 Klopfstein S., Vilhelmsen L., Ronquist F. 2015 A non-stationary Markov model detects directional evolution in hymenopteran morphology Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1609 Sasaki T., Yasukawa Y., Takahashi K. , et al. 2006 Extensive Morphological Convergence and Rapid Radiation in the Evolutionary History of the family Geoemydidae (Old World Pond Turtles) Revealed by SINE Insertion Analysis. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16100 Bertrand Y.J., Scheen A., Marcussen T. , et al. 2014 Assignment of Homoeologues to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae) Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1613 Yesson C., Culham A. 2006 Phyloclimatic Modeling: Combining Phylogenetics and Bioclimatic Modeling. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1619 Farwick A., Jordan U., Fuellen G. , et al. 2006 Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1630 Gruber K., Voss R., Jansa S. 2006 Base-Compositional Heterogeneity in the RAG1 Locus Among Didelphid Marsupials: Implications for Phylogenetic Inference and the Evolution of GC-content. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16472 Bardin J., Rouget I., Cecca F. 2014 Ontogenetic data analyzed as such in phylogenies Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1679 Marshall D., Simon C., Buckley T. 2006 Accurate Branch Length Estimation in Partitioned Bayesian Analyses Requires Accommodation of Among-Partition Rate Variation and Attention to Branch Length Priors. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1691 Vanderpoorten A., Goffinet B. 2006 Mapping uncertainty and phylogenetic uncertainty in ancestral character state reconstruction: an example in the moss genus Brachytheciastrum. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1711 Waters J., Rowe D., Apte S. , et al. 2007 Geological dates and molecular rates: rapid divergence of rivers and their biotas. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1714 Manos P., Soltis P., Soltis D. , et al. 2006 Phylogeny of Extant and Fossil Juglandaceae Inferred from the Integration of Molecular and Morphological Data Sets. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17143 Krug P.J., Vandetti J.E., Ellingson R.A. , et al. 2015 Species selection favors dispersive life histories in sea slugs, but higher per-offspring investment drives shifts to short-lived larvae Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1715 Manos P., Soltis P., Soltis D. , et al. 2006 Phylogeny of Extant and Fossil Juglandaceae Inferred from the Integration of Molecular and Morphological Data Sets. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17236 Shen X., Liang D., Chen M. , et al. 2015 Enlarged Multilocus Dataset Provides Surprisingly Younger Time of Origin for the Plethodontidae, the Largest Family of Salamanders Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1732 Arkhipova I. 2006 Distribution and phylogeny of Penelope-like elements in eukaryotes Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1760 Brysting A., Oxelman B., Huber K. , et al. 2007 Untangling Complex Histories of Genome Mergings in High Polyploids. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17602 Rojas D., Warsi O., Davalos L.M. 2016 Bats (Chiroptera: Noctilionoidea) challenge a recent origin of extant neotropical diversity Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1788 Hughes J., Kennedy M., Johnson K. , et al. 2007 Multiple Cophylogenetic Analyses Reveal Frequent Cospeciation between Pelecaniform Birds and Pectinopygus Lice. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1802 Rutschmann F., Eriksson T., Salim K. , et al. 2007 Assessing calibration uncertainty in molecular dating: The assignment of fossils to alternative calibration points. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1808 Hugall A., Foster R., Lee M. 2007 Calibration Choice, Rate Smoothing, and the Pattern of Tetrapod Diversification According to the Long Nuclear Gene RAG-1. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1811 Geuten K., Massingham T., Darius P. , et al. 2007 Experimental Design Criteria in Phylogenetics: Where to add Taxa. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1818 Springer M., Burk-herrick A., Meredith R. , et al. 2007 The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1822 Raxworthy C., Ingram C., Rabibisoa N. , et al. 2007 Applications of Ecological Niche Modeling for Species Delimitation: A Review and Empirical Evaluation using Day Geckos (Phelsuma) from Madagascar. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1833 Pereira S., Johnson K., Clayton D. , et al. 2007 Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleogene. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S18407 Roalson E.H., Roberts W.R. 2016 Distinct Processes Drive Diversification in Different Clades of Gesneriaceae Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1850 Mcguire J., Witt C., Altshuler D. , et al. 2007 Phylogenetic Systematics and Biogeography of Hummingbirds: Bayesian and Maximum Likelihood Analyses of Partitioned Data and Selection of an Appropriate Partitioning Strategy. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1856 Jordal B.H., Hewitt G. 2004 The origin and radiation of Macaronesian beetles breeding in Euphorbia: the relative importance of multiple data partitions and population sampling Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1869 Knapp M., Mudaliar R., Havell D. , et al. 2007 The Drowning of New Zealand and the Problem of Agathis. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1881 Leigh J., Susko E., Baumgartner M. , et al. 2007 Testing Phylogenetic Congruence in Phylogenomic Analysis. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1902 Ranwez V., Berry V., Criscuolo A. , et al. 2007 PhySIC: a veto supertree method with desirable properties. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1915 Lakner C., Mark P., Huelsenbeck J. , et al. 2008 Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1923 Jian S., Soltis P., Gitzendanner M. , et al. 2008 Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1927 Hines H. 2008 Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1936 Maureira butler I., Pfeil B., Muangprom A. , et al. 2008 The reticulate history of Medicago (Fabaceae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1962 Ekman S., Andersen H., Wedin M. 2008 The Limitations of Ancestral State Reconstruction and the Evolution of the Ascus in the Lecanorales (Lichenized Ascomycota) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1986 Weiblen G. 2001 Phylogenetic relationships of fig wasps pollinating functionally dioecious figs based on mitochondrial DNA sequences and morphology Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1987 Wahlberg N., Wheat C. 2008 Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1993 Nylander J., Olsson U., Alström P. , et al. 2008 Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2005 Belfiore N., Liu L., Moritz C. 2008 Multilocus Phylogenetics of a Rapid Radiation in the Genus Thomomys (Rodentia: Geomyidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2014 Brumfield R., Liu L., Lum D. , et al. 2008 Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae: Manacus) from multilocus sequence data. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2024 Schardl C.L., Craven K., Speakman S. , et al. 2008 A novel test for host-symbiont codivergence indicates ancient origin of fungal endophytes in grasses. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2035 Light J., Hafner M. 2008 Codivergence in Heteromyid Rodents (Rodentia: Heteromyidae) and their Sucking Lice of the Genus Fahrenholzia (Phthiraptera: Anoplura) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2045 Li C., Lu G., Ortí G. 2008 Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2061 Clayton J., Soltis P., Soltis D. 2009 Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2073 Dohrmann M., Janussen D., Reitner J. , et al. 2008 Phylogeny and evolution of glass sponges (Porifera, Hexactinellida) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S21001 Torres-montufar A., Borsch T., Ochoterena H. 2017 When Homoplasy is not Homoplasy: Dissecting Trait Evolution by Contrasting Composite and Reductive Coding Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2110 Bond J., Stockman A. 2008 An integrative method for delimiting cohesion species: finding the population-species interface in a group of Californian trapdoor spiders with extreme genetic divergence and geographic structuring. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S21191 Toljagić O., Voje K.L., Matschiner M. , et al. 2017 Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2137 Schoch C.L., Sung G., López-giráldez F. , et al. 2009 The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2138 Mcgowen M., Clark C., Gatesy J. 2008 The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2157 Grimm G., Renner S.S., Ricklefs R. , et al. 2008 Rooting and dating maples (Acer) with an uncorrelated-rates molecular clock: Implications for North American/Asian disjunctions. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2204 Farrell B., Linnen C. 2008 Comparison of methods for species-tree inference in the sawfly genus Neodiprion (Hymenoptera: Diprionidae) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2238 Olson L., Roberts T., Sargis E. 2009 Networks, Trees, and Treeshrews: Assessing Support and Identifying Conflict with Multiple Loci and a Problematic Root. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S22395 Billet G., Bardin J. 2018 Serial Homology and Correlated Characters in Morphological Phylogenetics: Modeling the Evolution of Dental Crests in Placentals Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S2248 Dressler S., Li Y., Renner S.S. , et al. 2009 More Miocene Dispersal Between Africa and Asia—the Case of Bridelia (Phyllanthaceae). Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2251 Bossu C., Near T.J., Bossu C. , et al. 2009 Gene Trees Reveal Repeated Instances of Mitochondrial DNA Introgression in Orangethroat Darters (Percidae: Etheostoma) Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2252 Shaffer H., Spinks P. 2009 Conflicting Mitochondrial and Nuclear Phylogenies For The Widely Disjunct Emys (Testudines: Emydidae) Species Complex, And What They Tell Us About Biogeography And Hybridization. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S2368 Marcus J., Mccune A. 1999 Ontogeny and phylogeny in the northern swordtail clade of Xiphophorus. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S322 Messenger S., Mcguire J. 1998 Morphology, molecules, and the phylogenetics of cetaceans. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S375 Livezey B. 1996 A phylogenetic analysis of geese and swans (Anseriformes: Anserinae), including selected fossil species. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S376 Baum D., Small R., Wendel J. 1998 Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S378 Baker R., Desalle R. 1997 Multiple sources of character information and the phylogeny of Hawaiian Drosophilids. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S379 Wayne R., Geffen E., Girman D. , et al. 1997 Molecular systematics of the Canidae. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S380 Friedrich M., Tautz D. 1997 Evolution and phylogeny of the Diptera: A molecular phylogenetic analysis using 28S rDNA sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S381 Mardulyn P., Milinkovitch M., Pasteels J. 1997 Phylogenetic analyses of DNA and allozyme data suggest that Gonioctena leaf beetles (Coleoptera; Chrysomelidae) experienced convergent evolution in their history of host-plant family shifts. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S382 Whiting M., Carpenter J., Wheeler Q. , et al. 1997 The strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S383 Lutzoni F. 1997 Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S384 Fitch D. 1997 Evolution of male tail development in rhabditid nematodes related to Caenorhabditis elegans. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S385 Brochu C. 1997 Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S393 Sullivan J., Markert J., Kilpatrick C. 1997 Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S394 Cannatella D., Hillis D.M., Chippindale P. , et al. 1998 Phylogeny of frogs of the Physalaemus pustulosus species group with an examination of data incongruence. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S398 Davis J., Simmons M., Stevenson D. , et al. 1998 Data decisiveness, data quality, and incongruence in phylogenetic analysis: and example from the monocotyledons using mitochondrial atpA sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S589 O'leary M., Geisler J. 1999 The Position of Cetacea Within Mammalia: Phylogenetic Analysis of Morphological Data from Extinct and Extant Taxa. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S602 Flook P., Klee S., Rowell C. 1999 Combined molecular phylogenetic analysis of the Orthoptera (Arthropoda, Insecta) and implications for their higher systematics. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S603 Jackman T., Larson A., De queiroz K. , et al. 1999 Phylogenetic relationships and tempo of early diversification in Anolis lizards. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S604 Van dijk M., Paradis E., Catzeflis F. , et al. 1999 The virtues of gaps: Xenarthran (Edentate) monophyly supported by a unique deletion in alphaA-crystallin. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S606 Hugot J. 1999 Primates and their pinworm parasites: the Cameron hypothesis revisited. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S608 Quicke D., Belshaw R. 1999 Incongruence between morphological data sets: an example from the evolution of endoparasitism among parasitic wasps (Hymenoptera: Braconidae). Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S649 Steppan S., Akhverdyan M., Lyapunova E. , et al. 1999 Molecular phylogeny of the marmots (Rodentia: Sciuridae): tests of evolutionary and biogeographic hypotheses. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S736 Hibbett D., Donoghue M.J. 2001 Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S781 Cannon C., Manos P. 2001 Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae). Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S821 Fishbein M., Hibsch-jetter C., Soltis D. , et al. 2001 Phylogeny of Saxifragales (Angiosperms, Eudicots): Analysis of a Rapid, Ancient Radiation. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S838 Waters J., Saruwatar T., Kobayashi T. , et al. 2002 Phylogenetic placement of retropinnid fishes: data set incongruence can be reduced using asymmetric character state transformation costs. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S841 Lundrigan B., Jansa S., Tucker P. 2002 Phylogenetic relationships in the genus Mus, based on paternally, maternally, and biparentally inherited characters. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S852 Kjer K., Blahnik R., Holzenthal R. 2001 Phylogeny of Trichoptera (Caddisflies): Characterization of Signal and Noise Within Multiple Datasets. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S894 Marvaldi A., Sequeira A., O'brien C. , et al. 2002 Molecular and morphological phylogenetics of weevils (Coleoptera: Curculionoidea): Do niche shifts accompany diversification? Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S948 Thewissen J., Madar S. 1999 Ankle morphology of the earliest Cetaceans and its implications for the phylogenetic relations among Ungulates. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S977 Smedmark J., Eriksson T., Evans R. , et al. 2003 Ancient Allopolyploid Speciation in Geinae (Rosaceae): Evidence from Nuclear granule-Bound Starch Synthase (GBSSI) Gene Sequences. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S994 Harshman J., Huddleston C., Bollback J. , et al. 2003 True and False Gavials: A Nuclear Gene Phylogeny of Crocodylia. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S9968 Dunn C., Pugh P., Haddock S. 2005 Molecular phylogenetics of the Siphonophora (Cnidaria), with implications for the evolution of functional specialization Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S9971 Siddall M., Fontanella F., Watson S. , et al. 2009 Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File