TreeBASE Search-Matrices for study 21537

@ARTICLE{TreeBASE2Ref27865, author = {Sandra Isabel Rodrigues Videira and Johannes (Ewald) Zacharias Groenewald and Chiharu Nakashima and Uwe Braun and Robert W. Barreto and Pierre J.G.M. De Wit and Pedro W. Crous}, title = {Mycosphaerellaceae - Chaos or clarity?}, year = {2017}, keywords = {Multi-gene phylogeny, Mycosphaerella, Plant pathogen, Taxonomy}, doi = {10.1016/j.simyco.2017.09.003}, url = {http://doi.org/10.1016/j.simyco.2017.09.003}, pmid = {}, journal = {Studies in Mycology }, volume = {87}, number = {}, pages = {257--421}, abstract = {The Mycosphaerellaceae represent thousands of fungal species that are associated with diseases on a wide range of plant hosts. Understanding and stabilising the taxonomy of genera and species of Mycosphaerellaceae is therefore of the utmost importance given their impact on agriculture, horticulture and forestry. Based on previous molecular studies, several phylogenetic and morphologically distinct genera within the Mycosphaerellaceae have been delimited. In this study a multigene phylogenetic analysis (LSU, ITS and rpb2) was performed based on 415 isolates representing 297 taxa and incorporating ex-type strains where available. The main aim of this study was to resolve the phylogenetic relationships among the genera currently recognised within the family, and to clarify the position of the cercosporoid fungi among them. Based on these results many well-known genera are shown to be paraphyletic, with several synapomorphic characters that have evolved more than once within the family. As a consequence, several old generic names including Cercosporidium, Fulvia, Mycovellosiella, Phaeoramularia and Raghnildiana are resurrected, and 32 additional genera are described as new. Based on phylogenetic data 120 genera are now accepted within the family, but many currently accepted cercosporoid genera still remain unresolved pending fresh collections and DNA data. The present study provides a phylogenetic framework for future taxonomic work within the Mycosphaerellaceae.} }

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Matrices for Study 21537

Citation title: "Mycosphaerellaceae - Chaos or clarity?".

Study name: "Mycosphaerellaceae - Chaos or clarity?".

This study is part of submission 21537 (Status: Published).

Matrices

ID	Matrix Title	Description	Data type	NTAX	NCHAR	Taxa
M43695	Fig. 5 Mycosphaerellaceae	Combined LSU, rpb2 and ITS sequence alignment of clades 67-72 in Fig. 1	Nucleic Acid	67	2064	View Taxa
M43691	Fig. 1 Mycosphaerellaceae	Overview phylogeny based on LSU and rpb2	Nucleic Acid	262	1471	View Taxa
M43692	Fig. 2 Mycosphaerellaceae	Combined LSU, rpb2 and ITS sequence alignment of dataset 2	Nucleic Acid	166	2113	View Taxa
M43694	Fig. 4 Mycosphaerellaceae	Combined LSU, rpb2 and ITS sequence alignment of dataset 4	Nucleic Acid	147	2121	View Taxa
M43693	Fig. 3 Mycosphaerellaceae	Combined LSU, rpb2 and ITS sequence alignment of dataset 3	Nucleic Acid	111	2067	View Taxa